genotype: Example genotype data

In designGG: Computational tool for designing genetical genomics experiments.

Description

genotype: example data of genotypes for each marker (rownames) and 100 strains such as recombinant inbred lines (RIL) (columnnames), with numeric values 1 and 0 (or A and B).

data(genotype)
genotype[1:5,1:5]

	Strain1	Strain2	Strain3	Strain4	Strain5
C1M1	1	0	0	0	1
C1M2	1	0	0	0	1
C1M3	1	0	0	0	1
C1M4	1	0	0	1	1
C1M5	1	0	0	1	1

Usage

data(genotype)

Format

genotype: 120 markers by 100 samples (Strains).

Author(s)

Yang Li <[e-mail]>, Gonzalo Vera <[e-mail]>
Rainer Breitling <[e-mail]>, Ritsert Jansen <[e-mail]>

Examples

  ##load the data
  data(genotype)
  
  ##view part of the the data
  genotype[1:5,1:5]

designGG documentation built on May 2, 2019, 5:51 a.m.