exampleConditionDesignTable: Example ConditionDesignTable data

In designGG: Computational tool for designing genetical genomics experiments.

Description

exampleConditionDesignTable: Example data of exampleConditionDesignTable for a hypothetical dual-channel microarray experiment in which there are 100 strains (e.g. recombinant inbred lines ) and 27 arrays available. Two environmental factors (temperature and cell type) are considered in this experiment. There are three levels for temperature (15, 24 and 29) and four levels for cell types (A, B, C, D). This table tells how to allocate samples into 12 (=3*4) different conditions. On average there are 4.5 (27*2/12) samples per condition.

> data(exampleConditionDesignTable)
> exampleConditionDesignTable[1:5,]

	Temperature	Cell Type			Selected Strains
condition1	15	A	Strain28	Strain81	Strain18	Strain61
condition2	24	A	Strain72	Strain40	Strain83	Strain44	Strain10
condition3	29	A	Strain22	Strain89	Strain3	Strain30	Strain58
condition4	15	B	Strain70	Strain47	Strain4	Strain59
condition5	24	B	Strain93	Strain97	Strain49	Strain14

Usage

data(exampleConditionDesignTable)

Format

exampleConditionDesignTable: 12 combination of conditions from three temepratures and four cell types.

Author(s)

Yang Li <[e-mail]>, Gonzalo Vera <[e-mail]>
Rainer Breitling <[e-mail]>, Ritsert Jansen <[e-mail]>

Examples

  ##load the data
  data(exampleConditionDesignTable)
  
  ##view part of the the data
  exampleConditionDesignTable[1:5,]

designGG documentation built on May 2, 2019, 5:51 a.m.