Describe the levels of all environmental factors for each RIL/strain in the
This is a subfunction needed for
designScore, but is not directly used.
conditionLevel( array.allocation, condition.allocation, condition.combination,nEnvFactors )
a matrix with nArray rows and nRIL columns. Elements of 1/0 indicates this RIL (or strain) is/not selected for this array.
a matrix with nCondition rows and nRIL columns. Elements of 1/0 indicates this RIL (or strain) is/not selected for this condition.
a matrix indicating all possible levels for environmental factors, with dimension of nConditions by nEnvFactors.
number of environmental factors, an integer bewteen 1 and 3.
For single-channel experiment,
NULL. Then the
For dual-channel experiment,
array.allocation decides which RILs are selected and
condition.allocation indicates which condition this RIL will be put in for the
A matrix with dimension of nRILs by nEnvFactors, each element indicates the level of a certain environmental factor to which the RIL (or strain) is exposed in the experiment.
Yang Li <firstname.lastname@example.org>, Gonzalo Vera <email@example.com>
Rainer Breitling <firstname.lastname@example.org>, Ritsert Jansen <email@example.com>
Y. Li, R. Breitling and R.C. Jansen. Generalizing genetical
genomics: the added value from environmental perturbation, Trends Genet
Y. Li, M. Swertz, G. Vera, J. Fu, R. Breitling, and R.C. Jansen. designGG: An R-package and Web tool for the optimal design of genetical genomics experiments. BMC Bioinformatics 10:188(2009)