Computational tool for designing genetical genomics experiments.

acceptanceProbability | Compute the acceptance probability for each updated design |

arrayUpdate | Update array allocation |

conditionAllocation | Allocate the selected RILs into different conditions |

conditionCombination | Generate a matrix indicating all possible levels for... |

conditionLevel | Levels of all environmental factors |

conditionUpdate | Update condition allocation |

designGG | Optimal design for genetical genomics experiments |

designGG-internal | Internal designGG functions |

designScore | Calculate the A- or D- optimality score based on current... |

exampleArrayDesignTable | Example output of ArrayDesignTable data |

exampleConditionDesignTable | Example ConditionDesignTable data |

examplePlotObj | Example PlotObj data |

experimentDesignTable | Make experiment table based design matrix |

genotype | Example genotype data |

initialDesign | Initialize an experiment design matrix |

interactionLevel | Generate levels for all interacting factors |

pairLevel | Pair levels for paired RILs (or strains) |

plotAllScores | Plot scores profiles |

temperatureStep | Calculate the temperature decreasing step for simulated... |

updateDesign | Updates current design |

variableNames | Generate variable names for all factors |

variableNumber | Compute the number of variables in the experiment |

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