API for dispRity
Measuring Disparity
| Global functions | |
|---|---|
| .format.results.subsets | Source code |
| BeckLee | Man page |
| BeckLee_ages | Man page |
| BeckLee_disparity | Man page |
| BeckLee_mat50 | Man page |
| BeckLee_mat99 | Man page |
| BeckLee_tree | Man page |
| CI.converter | Source code |
| Claddis.ordination | Man page Source code |
| HKY.seq.generator | Source code |
| MCMCglmm.covars | Man page Source code |
| MCMCglmm.levels | Man page Source code |
| MCMCglmm.sample | Man page Source code |
| MCMCglmm.subsets | Man page Source code |
| MCMCglmm.traits | Man page Source code |
| MCMCglmm.utilities | Man page |
| MCMCglmm.variance | Man page Source code |
| MIXED.model | Source code |
| VCV.cent.tend | Source code |
| VCV.scale | Source code |
| add.FADLAD | Source code |
| add.dimnames | Source code |
| add.root.time | Source code |
| add.rownames | Source code |
| add.state.names | Source code |
| add.steps.to.args | Source code |
| add.tips | Source code |
| add.tree | Man page Source code |
| adjust.FADLAD | Source code |
| adjust.age | Source code |
| adjust.centre | Source code |
| adonis.dispRity | Man page Source code |
| ancestral.dist | Man page Source code |
| angles | Man page Source code |
| apply.NA | Man page Source code |
| apply.proj | Source code |
| as.covar | Man page Source code |
| axis.covar | Man page Source code |
| between.groups.fun | Man page Source code |
| bhatt.coeff | Man page Source code |
| binary | Source code |
| bind.characters | Source code |
| bind.details | Source code |
| boot.full | Source code |
| boot.full.proba | Source code |
| boot.matrix | Man page Source code |
| boot.null | Source code |
| boot.single | Source code |
| boot.single.proba | Source code |
| bootstrap.wrapper | Source code |
| bound.data.split | Source code |
| castor.ace | Source code |
| centre.matrix | Source code |
| centroids | Man page Source code |
| char.diff | Man page Source code |
| character.selector | Source code |
| charadriiformes | Man page |
| check.class | Source code |
| check.covar | Source code |
| check.data | Source code |
| check.dimension | Source code |
| check.dispRity.data | Source code |
| check.dist.matrix | Source code |
| check.elements | Source code |
| check.get.help | Source code |
| check.group.list | Source code |
| check.length | Source code |
| check.list | Source code |
| check.method | Source code |
| check.metric | Source code |
| check.model.class | Source code |
| check.morpho | Man page Source code |
| check.multi.tree | Source code |
| check.one.metric | Source code |
| check.subsets | Source code |
| check.tree | Source code |
| chrono.subsets | Man page Source code |
| chrono.subsets.continuous | Source code |
| chrono.subsets.discrete | Source code |
| clean.data | Man page Source code |
| clean.list | Source code |
| clean.tree.table | Source code |
| column.round | Source code |
| combine.bootstraps | Source code |
| combine.pairs | Source code |
| combine.subsets | Man page Source code |
| convert.bitwise | Source code |
| convert.char.table | Source code |
| convert.list | Source code |
| convert.to.Claddis | Source code |
| convert.to.character | Source code |
| convert.to.numeric | Source code |
| convert.to.summary.phylolm | Source code |
| convhull.surface | Man page Source code |
| convhull.volume | Man page Source code |
| correct.position | Source code |
| count.neighbours | Man page Source code |
| covar.plot | Man page Source code |
| covar.utilities | Man page |
| crown.stem | Man page Source code |
| cust.series | Man page |
| cust.subsets | Man page |
| custom.series | Man page |
| custom.subsets | Man page Source code |
| decompose.VCV | Source code |
| decompose.base | Source code |
| decompose.matrix | Source code |
| decompose.matrix.wrapper | Source code |
| decompose.tree | Source code |
| demo_data | Man page |
| detect.bin.age | Source code |
| detect.edges | Source code |
| deviations | Man page Source code |
| diagonal | Man page Source code |
| digits.fun | Source code |
| dimension.level1.fun | Man page Source code |
| dimension.level2.fun | Man page Source code |
| dimension.level3.fun | Man page Source code |
| disalignment | Man page Source code |
| dispRity | Man page Source code |
| dispRity-package | Man page |
| dispRity.covar.projections | Man page Source code |
| dispRity.fast | Man page Source code |
| dispRity.metric | Man page |
| dispRity.multi.apply | Source code |
| dispRity.multi.merge | Source code |
| dispRity.multi.merge.data | Source code |
| dispRity.multi.merge.disparity | Source code |
| dispRity.multi.split | Source code |
| dispRity.per.group | Man page Source code |
| dispRity.through.time | Man page Source code |
| disparity | Man page |
| disparity.bootstraps | Source code |
| displacements | Man page Source code |
| distance.randtest | Man page Source code |
| do.cbind.fill | Source code |
| do.plot.axes | Source code |
| do.plot.char.diff.density | Source code |
| do.plot.continuous | Source code |
| do.plot.discrete | Source code |
| do.plot.dtt | Source code |
| do.plot.elements | Source code |
| do.plot.model.sim | Source code |
| do.plot.model.test | Source code |
| do.plot.observed | Source code |
| do.plot.preview | Source code |
| do.plot.projection | Source code |
| do.plot.randtest | Source code |
| do.plot.rarefaction | Source code |
| do.plot.test.metric | Source code |
| do.split.subsets | Source code |
| double.decompose | Source code |
| dtt.dispRity | Man page Source code |
| edge.length.tree | Man page Source code |
| elements.sampler | Source code |
| ellipse.volume | Man page Source code |
| ellipsoid.volume | Man page Source code |
| est.VCV | Source code |
| est.mean | Source code |
| eval.covar | Source code |
| expect_equal_round | Source code |
| extinction.subsets | Man page Source code |
| extract.dispRity | Man page Source code |
| extract.disparity.values | Source code |
| fast.slice.table | Source code |
| fill.dispRity | Man page Source code |
| find.num.elements | Source code |
| fun.dist.euclidean | Source code |
| fun.dist.manhattan | Source code |
| fun.proj | Source code |
| func.div | Man page Source code |
| func.eve | Man page Source code |
| geiger.area.between.curves | Source code |
| geiger.dtt.dispRity | Source code |
| geiger.get.simulation.matrix | Source code |
| geiger.make.modelmatrix | Source code |
| geiger.ratematrix | Source code |
| geiger.sim.char | Source code |
| gen.seq.HKY.binary | Source code |
| geomorph.ordination | Man page Source code |
| get.ancestor | Source code |
| get.ancestor.dist | Source code |
| get.bin.ages | Man page Source code |
| get.branch.length | Source code |
| get.center.scale.range | Source code |
| get.contrast.matrix | Man page Source code |
| get.covar | Man page Source code |
| get.data.params | Source code |
| get.digit | Source code |
| get.dispRity.metric.handle | Source code |
| get.disparity | Man page Source code |
| get.distance | Source code |
| get.dots | Source code |
| get.element | Source code |
| get.first.metric | Source code |
| get.formula | Source code |
| get.fossils | Source code |
| get.interval.subtrees | Source code |
| get.livings | Source code |
| get.matrix | Man page Source code |
| get.max.x | Source code |
| get.max.y | Source code |
| get.metric.from.call | Source code |
| get.min.x | Source code |
| get.min.y | Source code |
| get.neigbhours | Source code |
| get.new.tree | Source code |
| get.node.ID | Source code |
| get.node.ID.expand | Source code |
| get.node.labels | Source code |
| get.nodes | Source code |
| get.one.axis | Source code |
| get.one.group | Source code |
| get.one.tree.subset | Source code |
| get.parameters | Source code |
| get.percent.age | Source code |
| get.pgls.data | Source code |
| get.plot.params | Source code |
| get.prob.vector | Source code |
| get.proj.length | Source code |
| get.quantile.col | Source code |
| get.quantiles.from.table | Source code |
| get.reduced.dispRity | Source code |
| get.root | Source code |
| get.root.dist | Source code |
| get.rotation.matrix | Source code |
| get.row.col | Source code |
| get.sample.covar | Source code |
| get.sample.pop | Source code |
| get.sample.pop.name | Source code |
| get.shift | Source code |
| get.slice.subsets | Source code |
| get.slope.nonsignificant | Source code |
| get.slope.significant | Source code |
| get.subsets | Man page Source code |
| get.summary | Source code |
| get.time.slice | Source code |
| get.tips | Source code |
| get.tree | Man page Source code |
| get.tree.clades | Source code |
| group.dist | Man page Source code |
| htest.to.vector | Source code |
| inap.character | Source code |
| inap.clade | Source code |
| is.invariant | Source code |
| k.root | Source code |
| k.sampler | Source code |
| lapply.clean.data | Source code |
| lapply.get.elements | Source code |
| lapply.inap.clade | Source code |
| lapply.lm.type | Source code |
| lapply.observed | Source code |
| lapply.output.test.elements | Source code |
| lapply.summary | Source code |
| lapply.wrapper | Source code |
| lapply_loop.split | Source code |
| level.ellipses | Source code |
| linear.algebra.projection | Source code |
| list.to.table | Source code |
| location.update | Source code |
| make.args | Source code |
| make.covar | Source code |
| make.dispRity | Man page Source code |
| make.ellipse | Source code |
| make.factors | Source code |
| make.groups.factors | Source code |
| make.lapply.loop.nosample | Source code |
| make.lapply.loop.resample | Source code |
| make.list | Source code |
| make.matrix | Source code |
| make.metric | Man page Source code |
| make.null.model | Source code |
| make.origin.subsets | Source code |
| make.randtest.table | Source code |
| make.reduce.space.args | Source code |
| make.reduction.tables | Source code |
| make.sol | Source code |
| mapply.inap.character | Source code |
| mapply.observed | Source code |
| mapply.wrapper | Source code |
| match.parameters | Source code |
| match.tip.edge | Man page Source code |
| match.tree.data | Source code |
| matrix.dispRity | Man page Source code |
| matrix.to.dist | Source code |
| merge.to.list | Source code |
| merge.two.subsets | Source code |
| mode.val | Man page Source code |
| model.test | Man page Source code |
| model.test.lik | Source code |
| model.test.sim | Man page Source code |
| model.test.wrapper | Man page Source code |
| multi.ace | Man page Source code |
| n.ball.volume | Man page Source code |
| n.subsets | Man page Source code |
| name.fun | Source code |
| name.subsets | Man page Source code |
| neighbours | Man page Source code |
| null.test | Man page Source code |
| num.decimals | Source code |
| one.phylolm | Source code |
| one.randtest | Source code |
| one.tree.ace | Source code |
| opt.mode | Source code |
| optimise.parameter | Source code |
| optimise.results | Source code |
| orthogonise | Source code |
| output.htest.results | Source code |
| output.numeric.results | Source code |
| pair.plot | Man page Source code |
| pairwise.dist | Man page Source code |
| pgls.dispRity | Man page Source code |
| plot.char.diff | Man page Source code |
| plot.dispRity | Man page Source code |
| point.dist | Man page Source code |
| point.in.circle | Source code |
| pool.pgls.param | Source code |
| pooled.variance | Source code |
| print.dispRity | Man page Source code |
| projections | Man page Source code |
| projections.between | Man page Source code |
| projections.fast | Source code |
| projections.tree | Man page Source code |
| proportional.distribution | Source code |
| quantiles | Man page Source code |
| quantiles.per.groups | Source code |
| rTraitDisc.mk | Source code |
| radius | Man page Source code |
| rand.circle | Source code |
| random.circle | Man page Source code |
| randtest.dispRity | Man page Source code |
| ranges | Man page Source code |
| rank_env_dtt | Source code |
| recentre | Source code |
| recentre.levels | Source code |
| recursive.combine.list | Source code |
| recursive.merge | Source code |
| recursive.sort | Source code |
| recursive.sub | Source code |
| redimension | Source code |
| reduce.checks | Source code |
| reduce.matrix | Man page Source code |
| reduce.space | Man page Source code |
| reduce.space.one.type | Source code |
| remove.dispRity | Man page Source code |
| remove.tree | Man page Source code |
| remove.zero.brlen | Man page Source code |
| repeat.names | Source code |
| replace.intercept | Source code |
| replicate.bootstraps | Source code |
| rescale.dispRity | Man page Source code |
| roundness | Man page Source code |
| run.density.removal | Source code |
| run.size.removal | Source code |
| sample.distribution | Source code Source code |
| sample.n | Source code |
| sapply.projections | Source code |
| sauron.plot | Man page |
| save.comparison.list | Source code |
| scale.dispRity | Man page Source code |
| select.axes | Man page Source code |
| select.clade | Source code |
| select.method | Source code |
| select.model.list | Source code |
| select.nas | Source code |
| select.rarefaction | Source code |
| select.table.tips | Source code |
| set.comparisons.list | Source code |
| set.continuous.args.ace | Source code |
| set.continuous.args.ace.models | Source code |
| set.group.list | Source code |
| set.root.time | Man page Source code |
| set.sequence | Source code |
| sim.morpho | Man page Source code |
| single.decompose | Source code |
| size.subsets | Man page Source code |
| slice.edge | Source code |
| slice.tree | Man page Source code |
| slice.tree.sharp | Source code |
| slice.tree_ACCTRAN | Source code |
| slice.tree_DELTRAN | Source code |
| slice.tree_PROXIMITY | Source code |
| slice.tree_offspring.node | Source code |
| slice.tree_parent.node | Source code |
| slide.node.root | Source code |
| slide.nodes | Man page Source code |
| slide.nodes.internal | Source code |
| sort.dispRity | Man page Source code |
| space.maker | Man page Source code |
| span.tree.length | Man page Source code |
| state.selector | Source code |
| stop.call | Source code |
| summarise.fun | Source code |
| summary.dispRity | Man page Source code |
| term.name.split | Source code |
| test.dispRity | Man page Source code |
| test.list.lapply.distributions | Source code |
| test.mapply | Source code |
| test.metric | Man page Source code |
| time.series | Man page |
| time.subsets | Man page |
| toggle.multiphylo.list | Source code |
| transform.to.dispRity | Source code |
| translate.likelihood | Source code |
| translate.xyz | Source code |
| tree.age | Man page Source code |
| tree.age_scale | Source code |
| tree.age_table | Source code |
| tree.data.update | Source code |
| try.get.from.model | Source code |
| variances | Man page Source code |
| vector.angle | Source code |
