API for dispRity
Measuring Disparity

Global functions
BeckLee Man page
BeckLee_ages Man page
BeckLee_disparity Man page
BeckLee_mat50 Man page
BeckLee_mat99 Man page
BeckLee_tree Man page
CI.converter Source code
Claddis.ordination Man page Source code
HKY.seq.generator Source code
MCMCglmm.covars Man page Source code
MCMCglmm.levels Man page Source code
MCMCglmm.sample Man page Source code
MCMCglmm.subsets Man page Source code
MCMCglmm.traits Man page Source code
MCMCglmm.utilities Man page
MCMCglmm.variance Man page Source code
MIXED.model Source code
VCV.cent.tend Source code
VCV.scale Source code
add.FADLAD Source code
add.dimnames Source code
add.rownames Source code
add.state.names Source code
add.steps.to.args Source code
add.tree Man page Source code
adjust.FADLAD Source code
adjust.age Source code
adjust.centre Source code
adonis.dispRity Man page Source code
ancestral.dist Man page Source code
angles Man page Source code
apply.NA Man page Source code
apply.proj Source code
as.covar Man page Source code
axis.covar Man page Source code
between.groups.fun Man page Source code
bhatt.coeff Man page Source code
binary Source code
boot.full Source code
boot.full.proba Source code
boot.matrix Man page Source code
boot.null Source code
boot.single Source code
boot.single.proba Source code
bootstrap.wrapper Source code
bound.data.split Source code
castor.ace Source code
centre.matrix Source code
centroids Man page Source code
char.diff Man page Source code
character.selector Source code
charadriiformes Man page
check.class Source code
check.covar Source code
check.data Source code
check.dimension Source code
check.dispRity.data Source code
check.dist.matrix Source code
check.elements Source code
check.group.list Source code
check.length Source code
check.list Source code
check.method Source code
check.metric Source code
check.model.class Source code
check.morpho Man page Source code
check.multi.tree Source code
check.subsets Source code
check.tree Source code
chrono.subsets Man page Source code
chrono.subsets.continuous Source code
chrono.subsets.discrete Source code
clean.data Man page Source code
clean.list Source code
clean.tree.table Source code
column.round Source code
combine.bootstraps Source code
combine.pairs Source code
combine.subsets Man page Source code
convert.bitwise Source code
convert.char.table Source code
convert.list Source code
convert.to.Claddis Source code
convert.to.character Source code
convert.to.numeric Source code
convert.to.summary.phylolm Source code
convhull.surface Man page Source code
convhull.volume Man page Source code
correct.position Source code
covar.plot Man page Source code
covar.utilities Man page
crown.stem Man page Source code
cust.series Man page
cust.subsets Man page
custom.series Man page
custom.subsets Man page Source code
decompose Source code
decompose.VCV Source code
decompose.matrix Source code
decompose.matrix.wrapper Source code
decompose.tree Source code
demo_data Man page
detect.bin.age Source code
detect.edges Source code
deviations Man page Source code
diagonal Man page Source code
digits.fun Source code
dimension.level1.fun Man page Source code
dimension.level2.fun Man page Source code
dimension.level3.fun Man page Source code
disalignment Man page Source code
dispRity Man page Source code
dispRity-package Man page
dispRity.covar.projections Man page Source code
dispRity.fast Man page Source code
dispRity.metric Man page
dispRity.multi.apply Source code
dispRity.multi.merge Source code
dispRity.multi.merge.data Source code
dispRity.multi.merge.disparity Source code
dispRity.multi.split Source code
dispRity.per.group Man page Source code
dispRity.through.time Man page Source code
disparity Man page
disparity.bootstraps Source code
displacements Man page Source code
distance.randtest Man page Source code
do.cbind.fill Source code
do.plot.axes Source code
do.plot.char.diff.density Source code
do.plot.continuous Source code
do.plot.discrete Source code
do.plot.dtt Source code
do.plot.elements Source code
do.plot.model.sim Source code
do.plot.model.test Source code
do.plot.observed Source code
do.plot.preview Source code
do.plot.projection Source code
do.plot.randtest Source code
do.plot.rarefaction Source code
do.plot.test.metric Source code
do.split.subsets Source code
dtt.dispRity Man page Source code
edge.length.tree Man page Source code
elements.sampler Source code
ellipse.volume Man page Source code
ellipsoid.volume Man page Source code
est.VCV Source code
est.mean Source code
eval.covar Source code
expect_equal_round Source code
extinction.subsets Man page Source code
extract.dispRity Man page Source code
extract.disparity.values Source code
fast.slice.table Source code
fill.dispRity Man page Source code
find.num.elements Source code
fun.dist.euclidean Source code
fun.dist.manhattan Source code
fun.proj Source code
func.div Man page Source code
func.eve Man page Source code
geiger.area.between.curves Source code
geiger.dtt.dispRity Source code
geiger.get.simulation.matrix Source code
geiger.make.modelmatrix Source code
geiger.ratematrix Source code
geiger.sim.char Source code
gen.seq.HKY.binary Source code
geomorph.ordination Man page Source code
get.ancestor Source code
get.ancestor.dist Source code
get.bin.ages Man page Source code
get.branch.length Source code
get.contrast.matrix Man page Source code
get.covar Man page Source code
get.data.params Source code
get.digit Source code
get.dispRity.metric.handle Source code
get.disparity Man page Source code
get.distance Source code
get.dots Source code
get.element Source code
get.first.metric Source code
get.formula Source code
get.fossils Source code
get.interval.subtrees Source code
get.livings Source code
get.matrix Man page Source code
get.max.x Source code
get.max.y Source code
get.metric.from.call Source code
get.min.x Source code
get.min.y Source code
get.neigbhours Source code
get.new.tree Source code
get.node.ID Source code
get.node.ID.expand Source code
get.node.labels Source code
get.nodes Source code
get.one.axis Source code
get.one.group Source code
get.one.tree.subset Source code
get.parameters Source code
get.percent.age Source code
get.pgls.data Source code
get.plot.params Source code
get.prob.vector Source code
get.proj.length Source code
get.quantile.col Source code
get.quantiles.from.table Source code
get.reduced.dispRity Source code
get.root Source code
get.root.dist Source code
get.rotation.matrix Source code
get.row.col Source code
get.sample.covar Source code
get.sample.pop Source code
get.sample.pop.name Source code
get.shift Source code
get.slice.subsets Source code
get.slope.nonsignificant Source code
get.slope.significant Source code
get.subsets Man page Source code
get.summary Source code
get.time.slice Source code
get.tips Source code
get.tree Man page Source code
get.tree.clades Source code
group.dist Man page Source code
htest.to.vector Source code
inap.character Source code
inap.clade Source code
is.invariant Source code
k.root Source code
k.sampler Source code
lapply.clean.data Source code
lapply.get.elements Source code
lapply.inap.clade Source code
lapply.lm.type Source code
lapply.observed Source code
lapply.output.test.elements Source code
lapply.summary Source code
lapply.wrapper Source code
lapply_loop.split Source code
level.ellipses Source code
linear.algebra.projection Source code
list.to.table Source code
location.update Source code
make.args Source code
make.covar Source code
make.dispRity Man page Source code
make.ellipse Source code
make.factors Source code
make.groups.factors Source code
make.lapply.loop.nosample Source code
make.lapply.loop.resample Source code
make.matrix Source code
make.metric Man page Source code
make.null.model Source code
make.origin.subsets Source code
make.randtest.table Source code
make.reduce.space.args Source code
make.reduction.tables Source code
make.sol Source code
mapply.inap.character Source code
mapply.observed Source code
mapply.wrapper Source code
match.parameters Source code
match.tip.edge Man page Source code
match.tree.data Source code
matrix.dispRity Man page Source code
merge.to.list Source code
merge.two.subsets Source code
mode.val Man page Source code
model.test Man page Source code
model.test.lik Source code
model.test.sim Man page Source code
model.test.wrapper Man page Source code
multi.ace Man page Source code
n.ball.volume Man page Source code
n.subsets Man page Source code
name.fun Source code
name.subsets Man page Source code
neighbours Man page Source code
null.test Man page Source code
num.decimals Source code
one.phylolm Source code
one.randtest Source code
one.tree.ace Source code
opt.mode Source code
optimise.parameter Source code
optimise.results Source code
orthogonise Source code
output.htest.results Source code
output.numeric.results Source code
pair.plot Man page Source code
pairwise.dist Man page Source code
pgls.dispRity Man page Source code
plot.char.diff Man page Source code
plot.dispRity Man page Source code
point.dist Man page Source code
point.in.circle Source code
pool.pgls.param Source code
pooled.variance Source code
print.dispRity Man page Source code
projections Man page Source code
projections.between Man page Source code
projections.fast Source code
projections.tree Man page Source code
proportional.distribution Source code
quantiles Man page Source code
quantiles.per.groups Source code
rTraitDisc.mk Source code
radius Man page Source code
rand.circle Source code
random.circle Man page Source code
randtest.dispRity Man page Source code
ranges Man page Source code
rank_env_dtt Source code
recentre Source code
recentre.levels Source code
recursive.combine.list Source code
recursive.merge Source code
recursive.sort Source code
recursive.sub Source code
redimension Source code
reduce.matrix Man page Source code
reduce.space Man page Source code
reduce.space.one.type Source code
remove.tree Man page Source code
remove.zero.brlen Man page Source code
repeat.names Source code
replace.intercept Source code
replicate.bootstraps Source code
rescale.dispRity Man page Source code
roundness Man page Source code
run.density.removal Source code
run.size.removal Source code
sample.distribution Source code Source code
sample.n Source code
sapply.projections Source code
sauron.plot Man page
save.comparison.list Source code
scale.dispRity Man page Source code
select.axes Man page Source code
select.clade Source code
select.method Source code
select.model.list Source code
select.nas Source code
select.rarefaction Source code
select.table.tips Source code
set.comparisons.list Source code
set.group.list Source code
set.sequence Source code
sim.morpho Man page Source code
size.subsets Man page Source code
slice.edge Source code
slice.tree Man page Source code
slice.tree.sharp Source code
slice.tree_ACCTRAN Source code
slice.tree_DELTRAN Source code
slice.tree_PROXIMITY Source code
slice.tree_offspring.node Source code
slice.tree_parent.node Source code
slide.node.root Source code
slide.nodes Man page Source code
slide.nodes.internal Source code
sort.dispRity Man page Source code
space.maker Man page Source code
span.tree.length Man page Source code
state.selector Source code
stop.call Source code
summarise.fun Source code
summary.dispRity Man page Source code
term.name.split Source code
test.dispRity Man page Source code
test.list.lapply.distributions Source code
test.mapply Source code
test.metric Man page Source code
time.series Man page
time.subsets Man page
toggle.multiphylo.list Source code
transform.to.dispRity Source code
translate.likelihood Source code
translate.xyz Source code
tree.age Man page Source code
tree.age_scale Source code
tree.age_table Source code
tree.data.update Source code
try.get.from.model Source code
variances Man page Source code
vector.angle Source code
dispRity documentation built on May 29, 2024, 9:40 a.m.