bioamp: A function to analyze plot the raw data from a Bio-Rad...
In dpcR: Digital PCR Analysis

Description Usage Arguments Author(s) Examples

bioamp is a function to plot and analyze the amplitude data of a Bio-Rad droplet digital PCR experiment.

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bioamp(data = data, amp_x = 1, amp_y = 2, cluster = 3,
  robust = TRUE, plot = TRUE, stat = TRUE,
  xlab = "Assay 1 Amplitude", ylab = "Assay 2 Amplitude", ...)

`data`	object of class `what` containing the amplitude data.
`amp_x`	is the first amplitude channel (x-axis).
`amp_y`	is the second amplitude channel (y-axis).
`cluster`	are the clusters of the plot. The number indicates the column of a table, which contains the cluster information.
`robust`	Is the method used to calculate the location (mean or median) and dispersion (standard deviation or median absolute deviation).
`plot`	logical, if `TRUE`, the plot is printed.
`stat`	logical, if `TRUE`, the statistics of the droplet digital PCR experiment are calculated.
`xlab`	x-label of the plot.
`ylab`	y-label of the plot.
`...`	other arguments passed to the `plot` function (see `plot.default` for details).

Stefan Roediger, Michal Burdukiewcz

par(mfrow = c(1,2))
bioamp(data = pds_raw[["D01"]], main = "Well D01", pch = 19)
bioamp(data = pds_raw[["D02"]], main = "Well D02", pch = 19)
par(mfrow = c(1,1))