count_test-class: Class '"count_test"'
In dpcR: Digital PCR Analysis

Description Usage Arguments Details Methods (by generic) Slots Author(s) See Also

Objects of this class are created by test_counts.

## S4 method for signature 'count_test'
summary(object)

## S4 method for signature 'count_test'
coef(object)

## S4 method for signature 'count_test'
show(object)

## S4 method for signature 'count_test,ANY'
plot(x, aggregate = FALSE, nice = TRUE)

`object`	of class `count_test`.
`x`	object of class `count_test`.
`aggregate`	logical, if `TRUE` experiments are aggregated according to their group.
`nice`	logical, if `TRUE` a more aesthetically pleasing (but harder to customize) version of the plot is created.

In case of the aggregated plot, mean confidence intervals for groups are presented as dashed lines.

summary: Summary statistics of assigned groups.
coef: Extract coefficients of groups.
show: Print both group_coef and test_res.
plot: plots mean number of molecules per partition and its confidence intervals.

group_coef: "data.frame" containing experiments, groups to which they belong and calculated values of rate (lambda).
test_res: "matrix" containing result of multiple comparisions t-test.
model: "character" name of GLM used to compare experiments.

Michal Burdukiewicz.

test_counts.

dpcR documentation built on May 2, 2019, 7:04 a.m.