Files in gap

Genetic Analysis Package

R/gc.lambda.R R/gcp.R R/hap.R R/chrs.R R/gif.R R/qtl2dplot.R R/labelManhattan.R R/kin.morgan.R R/qtl2dplotly.R R/cis.vs.trans.classification.R R/makeRLEplots.R R/cnvplot.R R/revStrand.R R/KCC.R R/onload.R R/hwe.cc.R R/pfc.R R/log10p.R R/bt.R R/get_pve_se.R R/metap.R R/genecounting.R R/hwe.R R/qtlFinder.R R/chow.test.R R/mtdt2.R R/h2G.R R/hwe.hardy.R R/mr_forestplot.R R/masize.R R/mhtplot2.R R/gap.R R/ccsize.R R/muvar.R R/miamiplot2.R R/2ld.R R/qtlClassifier.R R/BFDP.R R/hapfun.R R/metareg.R R/h2.jags.R R/hap.score.R R/METAL_forestplot.R R/circos.mhtplot.R R/ESplot.R R/circos.cnvplot.R R/AE3.R R/mvmeta.R R/log10pvalue.R R/ab.R R/sentinels.R R/logp.R R/whscore.R R/cs.R R/get_sdy.R R/asplot.R R/gcontrol2.R R/pfc.sim.R R/pbsize2.R R/invnormal.R R/mr.R R/pedtodot_verbatim.R R/runshinygap.R R/makeped.R R/mhtplot.trunc.R R/comp.score.R R/hwe.jags.R R/pedtodot.R R/mia.R R/mtdt.R R/SNP.R R/read.ms.output.R R/mhtplot.R R/gap-internal.R R/miamiplot.R R/pbsize.R R/snptest_sample.R R/circos.mhtplot2.R R/h2GE.R R/b2r.R R/fbsize.R R/htr.R R/MCMCgrm.R R/circos.cis.vs.trans.plot.R R/gc.em.R R/qtl3dplotly.R R/qqfun.R R/get_b_se.R R/pgc.R R/s2k.R R/hap.control.R R/tscc.R R/snpid.R R/qqunif.R R/gcontrol.R R/pvalue.R R/h2l.R R/FPRP.R R/hap.em.R R/utils.R R/h2_mzdz.R inst/README.md inst/doc/jss.pdf inst/doc/gap.R inst/doc/gap.Rmd inst/doc/shinygap.Rmd inst/shinygap/ui.R inst/shinygap/README.md inst/shinygap/server.R inst/shinygap/R/global.R inst/scripts/GRCh.R demo/gap.R vignettes/gap.Rmd vignettes/shinygap.Rmd man/pfc.Rd man/pfc.sim.Rd man/get_b_se.Rd man/pbsize2.Rd man/mhtplot2.Rd man/h2l.Rd man/cis.vs.trans.classification.Rd man/inv_chr_pos_a1_a2.Rd man/revStrand.Rd man/ccsize.Rd man/miamiplot.Rd man/pedtodot_verbatim.Rd man/s2k.Rd man/ReadGRM.Rd man/allele.recode.Rd man/LDkl.Rd man/WriteGRM.Rd man/cs.Rd man/hg38.Rd man/comp.score.Rd man/ixy.Rd man/ci2ms.Rd man/mia.Rd man/LD22.Rd man/pbsize.Rd man/gap.Rd man/mtdt2.Rd man/whscore.Rd man/g2a.Rd man/print.hap.score.Rd man/log10pvalue.Rd man/muvar.Rd man/snptest_sample.Rd man/ReadGRMBin.Rd man/chow.test.Rd man/BFDP.Rd man/ab.Rd man/pvalue.Rd man/logp.Rd man/hwe.cc.Rd man/hap.score.Rd man/invnormal.Rd man/gc.lambda.Rd man/cnvplot.Rd man/tscc.Rd man/grid2d.Rd man/ESplot.Rd man/kin.morgan.Rd man/AE3.Rd man/hmht.control.Rd man/qtlClassifier.Rd man/hg18.Rd man/hap.Rd man/WriteGRMBin.Rd man/qtlFinder.Rd man/circos.cis.vs.trans.plot.Rd man/get_pve_se.Rd man/plot.hap.score.Rd man/hwe.jags.Rd man/gcontrol2.Rd man/runshinygap.Rd man/MCMCgrm.Rd man/SNP.Rd man/xy.Rd man/mht.control.Rd man/mr.Rd man/gc.em.Rd man/miamiplot2.Rd man/h2_mzdz.Rd man/gif.Rd man/pgc.Rd man/mhtplot.Rd man/read.ms.output.Rd man/fbsize.Rd man/metareg.Rd man/pedtodot.Rd man/htr.Rd man/masize.Rd man/qtl2dplotly.Rd man/mhtplot.trunc.Rd man/mtdt.Rd man/qtl3dplotly.Rd man/h2GE.Rd man/hap.control.Rd man/asplot.Rd man/makeped.Rd man/mr_forestplot.Rd man/hwe.Rd man/bt.Rd man/metap.Rd man/geno.recode.Rd man/FPRP.Rd man/qqunif.Rd man/hap.em.Rd man/b2r.Rd man/h2.jags.Rd man/labelManhattan.Rd man/circos.cnvplot.Rd man/KCC.Rd man/mvmeta.Rd man/circos.mhtplot2.Rd man/klem.Rd man/h2G.Rd man/METAL_forestplot.Rd man/gcontrol.Rd man/circos.mhtplot.Rd man/hwe.hardy.Rd man/qqfun.Rd man/a2g.Rd man/log10p.Rd man/qtl2dplot.Rd man/genecounting.Rd man/hg19.Rd man/sentinels.Rd man/chr_pos_a1_a2.Rd man/gcp.Rd man/get_sdy.Rd