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### Unit tests of function glarma
### Functions with name test.* are run by R CMD check or by make if
### LEVEL=1 in call to make
### Functions with name levelntest.* are run by make if
### LEVEL=n in call to make
### Functions with name graphicstest.* are run by make if
### LEVEL=graphics in call to make
test.glarma <- function(){
## Purpose: level 1 test of Poisson Distribution with Pearson Residuals.
data(Polio)
y <- Polio[, 2]
X <- as.matrix(Polio[, 3:8])
glarmamod <- glarma(y, X, thetaLags = c(1, 2, 5), type = "Poi",
method = "FS",
residuals = "Pearson", maxit = 100, grad = 2.22e-16)
ARMA.coef <- coef(glarmamod, "ARMA")
beta.coef <- coef(glarmamod, "beta")
standard.beta <- c(0.129975397556676, -3.9283713744459, -0.0991261982282867,
-0.530844470598217, 0.211127630371824, -0.39323015135847)
standard.ARMA <- c(0.218459747602161, 0.127231090367536, 0.0872861009061489)
checkTrue(max(abs(beta.coef - standard.beta)) < 10^(-7))
checkTrue(max(abs(ARMA.coef - standard.ARMA)) < 10^(-7))
## Purpose: level 1 test of Poisson Distribution with Score Residuals
y <- Polio[, 2]
X <- as.matrix(Polio[, 3:8])
glarmamod <- glarma(y, X, thetaLags = c(1, 2, 5), type = "Poi",
method = "FS",
residuals = "Score", maxit = 100, grad = 2.22e-16)
ARMA.coef <- coef(glarmamod, "ARMA")
beta.coef <- coef(glarmamod, "beta")
standard.beta <- c(0.0437942685983466, -3.89976137445958,
-0.007277992577949, -0.588309451810896,
0.293551629091528, -0.283751085205294)
standard.ARMA <- c(0.300327727382111, 0.236693180005699, 0.0182432087875542)
checkTrue(max(abs(beta.coef - standard.beta)) < 10^(-7))
checkTrue(max(abs(ARMA.coef - standard.ARMA)) < 10^(-7))
## Purpose: level 1 test of Binomial Distribution with Pearson Residuals
data(RobberyConvict)
datalen <- dim(RobberyConvict)[1]
monthmat <- matrix(0, nrow = datalen, ncol = 12)
dimnames(monthmat) <- list(NULL, c("Jan", "Feb", "Mar", "Apr", "May", "Jun",
"Jul", "Aug", "Sep", "Oct", "Nov", "Dec"))
months <- unique(months(strptime(RobberyConvict$Date, "%m/%d/%Y"),
abbreviate = TRUE))
for (j in 1:12) {
monthmat[months(strptime(RobberyConvict$Date, "%m/%d/%Y"),
abbreviate = TRUE) == months[j], j] <-1
}
RobberyConvict <- cbind(rep(1, datalen), RobberyConvict, monthmat)
rm(monthmat)
## LOWER COURT ROBBERY
y1 <- RobberyConvict$LC.Y
n1 <- RobberyConvict$LC.N
Y <- cbind(y1, n1 - y1)
glm.LCRobbery <- glm(Y ~ -1 + Incpt + Step.2001 +
I(Feb + Mar + Apr + May + Jun + Jul) +
I(Aug + Sep + Oct + Nov + Dec),
data = RobberyConvict, family = binomial(link = logit),
na.action = na.omit, x = TRUE)
X <- glm.LCRobbery$x
## Newton Raphson
glarmamod <- glarma(Y, X, phiLags = c(1), type = "Bin", method = "NR",
residuals = "Pearson", maxit = 100, grad = 1e-6)
ARMA.coef <- coef(glarmamod, "ARMA")
beta.coef <- coef(glarmamod, "beta")
standard.beta <- c(-0.274683503145766, 0.822033012059457, -0.35677153900415,
-0.50038714171842)
standard.ARMA <- 0.0817517215109488
checkTrue(max(abs(beta.coef - standard.beta)) < 10^(-7))
checkTrue(max(abs(ARMA.coef - standard.ARMA)) < 10^(-7))
## Purpose: level 1 test of Negative Binomial Distribution
## with Pearson Residuals
data(Asthma)
y <- Asthma[, 1]
X <- as.matrix(Asthma[, 2:16])
glarmamod <- glarma(y, X, thetaLags = 7, type = "NegBin", method = "NR",
residuals = "Pearson", maxit = 100, grad = 1e-6)
NB.coef <- coef(glarmamod, "NB")
ARMA.coef <- coef(glarmamod, "ARMA")
beta.coef <- coef(glarmamod, "beta")
standard.NB <- 37.1894834266554
standard.ARMA <- 0.0439191964354301
standard.beta <- c(0.583971105773007, 0.194554270324514, 0.229989870050125,
-0.214500792563189, 0.177283114311301, 0.168433728455995,
-0.10403564277627,
0.199030077083204, 0.130872744740543, 0.0858677507474468,
0.170818285353772,
0.252758864156398, 0.305721203236321, 0.436070616091362,
0.114120291126706)
checkTrue(max(abs(NB.coef - standard.NB)) < 10^(-7))
checkTrue(max(abs(beta.coef - standard.beta)) < 10^(-7))
checkTrue(max(abs(ARMA.coef - standard.ARMA)) < 10^(-7))
}
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