API for glmmTMB
Generalized Linear Mixed Models using Template Model Builder
| Global functions | |
|---|---|
| .CI_univariate_monotone | Source code |
| .adjustX | Man page |
| .checkRankX | Man page |
| .collectDuplicates | Man page |
| .onLoad | Source code |
| .onUnload | Source code |
| .prt.call.glmmTMB | Source code |
| .prt.call.glmmTMB2 | Source code |
| .tweedie_power | Source code |
| Anova.II.glmmTMB | Source code |
| Anova.III.glmmTMB | Source code |
| Anova.glmmTMB | Man page |
| ConjComp | Source code |
| Effect.glmmTMB | Man page |
| GMRFmarginal | Source code |
| OwlModel | Man page |
| OwlModel_nb1_bs | Man page |
| OwlModel_nb1_bs_mcmc | Man page |
| Owls | Man page |
| Salamanders | Man page |
| VarCorr | Man page |
| VarCorr.glmmTMB | Man page |
| abbrDeparse | Source code |
| as.data.frame.ranef.glmmTMB | Man page |
| as.theta.vcov | Man page |
| asDf0 | Source code |
| assertIdenticalModels | Source code |
| bell | Man page Source code |
| beta_family | Man page Source code |
| betabinomial | Man page Source code |
| cat.f | Source code |
| cat.f2 | Source code |
| check_dep_version | Source code |
| check_dots | Source code |
| coef. | Source code |
| coef.glmmTMB | Man page |
| collapse_list | Source code |
| compois | Man page Source code |
| confint.glmmTMB | Man page |
| confint.profile.glmmTMB | Man page Source code |
| deviance.glmmTMB | Man page |
| df.residual.glmmTMB | Source code |
| diagnose | Man page Source code |
| dnbinom1 | Source code |
| downstream_methods | Man page |
| dtruncated_nbinom1 | Man page Source code |
| dtruncated_nbinom2 | Man page Source code |
| dtruncated_poisson | Man page Source code |
| emmeans.glmmTMB | Man page |
| epil2 | Man page |
| error | Source code |
| extractAIC.glmmTMB | Source code |
| family.glmmTMB | Source code |
| family_factory | Source code |
| family_glmmTMB | Man page |
| family_params | Man page Source code |
| finalizeTMB | Man page |
| fitTMB | Man page |
| fix_predvars | Source code |
| fixef | Man page |
| fixef.glmmTMB | Man page Source code |
| formComp | Source code |
| formatVC | Man page |
| formula.glmmTMB | Man page |
| from_prior_syn | Source code |
| genpois | Man page Source code |
| getCapabilities | Man page Source code |
| getGrpVar | Man page |
| getME | Man page |
| getME.glmmTMB | Man page Source code |
| getParList | Source code |
| getParms | Source code |
| getParnames | Source code |
| getReStruc | Man page |
| getXReTrms | Man page Source code |
| get_abi_version | Source code |
| get_autopar | Man page Source code |
| get_b_inds | Source code |
| get_b_terms | Source code |
| get_cor | Man page Source code |
| get_family | Source code |
| get_matdim | Source code |
| get_nbinom_disp | Source code |
| get_pars | Source code |
| get_re_names | Source code |
| glmmTMB | Man page |
| glmmTMBControl | Man page |
| gt_load | Man page Source code |
| hasRandom | Source code |
| ident | Source code |
| in_glm_fit | Source code |
| isLMM.glmmTMB | Man page |
| isNullPointer | Source code |
| isREML | Source code |
| logLik.glmmTMB | Source code |
| lognormal | Man page Source code |
| make_family | Source code |
| make_pars | Source code |
| map.theta.propto | Man page |
| match_names | Source code |
| mkTMBStruc | Man page Source code |
| mk_pop_pred | Source code |
| model.frame.glmmTMB | Source code |
| model.matrix.glmmTMB | Man page |
| nbinom1 | Man page Source code |
| nbinom12 | Man page Source code |
| nbinom2 | Man page Source code |
| nbinom_errstr | Source code |
| noZI | Source code |
| nobs.glmmTMB | Source code |
| npar | Source code |
| nullSparseMatrix | Source code |
| numFactor | Man page Source code |
| omp_check | Man page Source code |
| openmp | Man page |
| openmp_debug | Source code |
| ordbeta | Man page Source code |
| our_binom_initialize | Source code |
| parallel_default | Source code |
| parseNumLevels | Man page Source code |
| pnbinom1 | Source code |
| predict.glmmTMB | Man page Source code |
| print.VarCorr.glmmTMB | Man page |
| print.fixef.glmmTMB | Source code |
| print.glmmTMB | Source code |
| print.glmmTMB_prior | Source code |
| print.ranef.glmmTMB | Source code |
| print.vcov.glmmTMB | Source code |
| printDispersion | Source code |
| printFamily | Source code |
| priors | Man page |
| proc_priors | Source code |
| profile.glmmTMB | Man page Source code |
| put_cor | Man page Source code |
| qnbinom1 | Source code |
| ranef | Man page |
| ranef.glmmTMB | Man page Source code |
| reexports | Man page |
| refit | Man page |
| refit.glmmTMB | Man page |
| reinstalling | Man page |
| relatives | Source code |
| residuals.glmmTMB | Man page Source code |
| rnbinom1 | Source code |
| set_class | Source code |
| set_simcodes | Man page Source code |
| sigma | Man page |
| sigma.glmmTMB | Man page Source code |
| simulate.glmmTMB | Man page |
| simulate_new | Man page Source code |
| skewnormal | Man page Source code |
| sort_termlabs | Source code |
| spider_long | Man page |
| startParams | Man page Source code |
| t_family | Man page Source code |
| terms.glmmTMB | Man page Source code |
| to_prior_syn | Source code |
| trivialDisp | Source code |
| trivialFixef | Source code |
| truncated_compois | Man page Source code |
| truncated_genpois | Man page Source code |
| truncated_nbinom1 | Man page Source code |
| truncated_nbinom2 | Man page Source code |
| truncated_poisson | Man page Source code |
| tweedie | Man page Source code |
| up2date | Man page Source code |
| vcov. | Source code |
| vcov.glmmTMB | Man page Source code |
| weights.glmmTMB | Man page |
| zeroDisp | Source code |
| ziGamma | Man page Source code |
