haploReconstruct: Reconstruction of Haplotype-Blocks from Time Series Data

Reconstruction of founder haplotype blocks from time series data.

AuthorSusanne U. Franssen, Nicholas H. Barton, Christian Schloetterer
Date of publication2016-10-10 18:18:49
MaintainerSusanne U. Franssen <susefranssen@googlemail.com>
LicenseGPL-3
Version0.1.2

View on CRAN

Functions

ex_dat Man page
hbr Man page
hbr-class Man page
initialize_SNP_time_series Man page
inspect_window Man page
inspect_window_avLink Man page
inspect_window_avLink.hbr Man page
inspect_window_avLink,hbr-method Man page
inspect_window_dbScan Man page
inspect_window_dbScan.hbr Man page
inspect_window_dbScan,hbr-method Man page
inspect_window.hbr Man page
inspect_window,hbr-method Man page
inspect_window_PCA Man page
inspect_window_PCA.hbr Man page
inspect_window_PCA,hbr-method Man page
map Man page
map.hbr Man page
map,hbr-method Man page
markers Man page
markers.hbr Man page
markers,hbr-method Man page
number_hbr Man page
number_hbr.hbr Man page
number_hbr,hbr-method Man page
plot_cluster_trajectories Man page
plot_cluster_trajectories.hbr Man page
plot_cluster_trajectories,hbr-method Man page
plot.hbr Man page
plot_hbr_freq Man page
plot_hbr-freq.hbr Man page
plot_hbr_freq,hbr-method Man page
plot,hbr-method Man page
plot_marker_trajectories Man page
plot_marker_trajectories.hbr Man page
plot_marker_trajectories,hbr-method Man page
reconstruct_hb Man page
reconstruct_hb.SNP_time_series Man page
reconstruct_hb,SNP_time_series-method Man page
rev_map Man page
rev_map.hbr Man page
rev_map,hbr-method Man page
show Man page
show.hbr Man page
show,hbr-method Man page
show.SNP_time_series Man page
show,SNP_time_series-method Man page
SNP_time_series Man page
SNP_time_series-class Man page
summary.hbr Man page
summary,hbr-method Man page
sync_to_frequencies Man page

Files

haploReconstruct
haploReconstruct/NAMESPACE
haploReconstruct/data
haploReconstruct/data/datalist
haploReconstruct/data/ex_dat.rda
haploReconstruct/R
haploReconstruct/R/AllGenerics.R haploReconstruct/R/methods-hbr.R haploReconstruct/R/Data.Classes.R haploReconstruct/R/haploReconstruct.R
haploReconstruct/R/ex_dat.r
haploReconstruct/R/functions-hbr.R haploReconstruct/R/functions-read-sync.R haploReconstruct/R/methods-SNP_time_series.R haploReconstruct/R/functions-SNP_time_series.R
haploReconstruct/MD5
haploReconstruct/DESCRIPTION
haploReconstruct/man
haploReconstruct/man/show-hbr-method.Rd haploReconstruct/man/plot_marker_trajectories-hbr-method.Rd haploReconstruct/man/plot_hbr_freq-hbr-method.Rd haploReconstruct/man/markers-hbr-method.Rd haploReconstruct/man/number_hbr-hbr-method.Rd haploReconstruct/man/inspect_window_PCA-hbr-method.Rd haploReconstruct/man/ex_dat.Rd haploReconstruct/man/reconstruct_hb-SNP_time_series-method.Rd haploReconstruct/man/map-hbr-method.Rd haploReconstruct/man/initialize_SNP_time_series.Rd haploReconstruct/man/inspect_window-hbr-method.Rd haploReconstruct/man/inspect_window_dbScan-hbr-method.Rd haploReconstruct/man/plot_cluster_trajectories-hbr-method.Rd haploReconstruct/man/sync_to_frequencies.Rd haploReconstruct/man/hbr-class.Rd haploReconstruct/man/inspect_window_avLink-hbr-method.Rd haploReconstruct/man/SNP_time_series-class.Rd haploReconstruct/man/plot-hbr-method.Rd haploReconstruct/man/rev_map-hbr-method.Rd haploReconstruct/man/show-SNP_time_series-method.Rd haploReconstruct/man/summary-hbr-method.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.