inspect_window-hbr-method: Haplotype-block marker inspection for a window

Description Usage Arguments Details Author(s) See Also

Description

Plots correlations and groupings of haplotype-markers for a given window

Usage

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## S4 method for signature 'hbr'
inspect_window(object, window, colCluster = T)

Arguments

object

object of class hbr containing the results of reconstructed haplotype-blocks

window

number of the window, which should be inspected

colCluster

boolean value indicating whether columns in the output correlation plot should be clustered or the original positions of the markers reflecting genomic positions should be kept.

Details

The plotting method operates on hbr objects. For a specified window the correlation matrix for identified haplotype-block markers in this window is visualized also indicating haplotype-block identity.

Author(s)

Susanne U. Franssen

See Also

hbr ex_dat summary.hbr plot.hbr plot_cluster_trajectories plot_marker_trajectories map rev_map markers plot_hbr_freq inspect_window_PCA inspect_window_avLink inspect_window_dbScan number_hbr


haploReconstruct documentation built on May 2, 2019, 1:46 p.m.