API for haploReconstruct
Reconstruction of Haplotype-Blocks from Time Series Data

Global functions
SNP_time_series Man page
SNP_time_series-class Man page
ex_dat Man page
getATCG Source code
get_clusters Source code
get_clusters_dbScan Source code
get_edgelist Source code
get_gwide_cluster_summary Source code
get_longcluster_markers Source code
get_nodes Source code
get_win Source code
get_win_cluster_marker Source code
hbr Man page
hbr-class Man page
initialize_SNP_time_series Man page Source code
inspect_window Man page
inspect_window,hbr-method Man page
inspect_window.hbr Man page
inspect_window_PCA Man page
inspect_window_PCA,hbr-method Man page
inspect_window_PCA.hbr Man page
inspect_window_avLink Man page
inspect_window_avLink,hbr-method Man page
inspect_window_avLink.hbr Man page
inspect_window_dbScan Man page
inspect_window_dbScan,hbr-method Man page
inspect_window_dbScan.hbr Man page
lappend Source code
map Man page
map,hbr-method Man page
map.hbr Man page
markers Man page
markers,hbr-method Man page
markers.hbr Man page
number_hbr Man page
number_hbr,hbr-method Man page
number_hbr.hbr Man page
plot,hbr-method Man page
plot.hbr Man page
plot_cluster_trajectories Man page
plot_cluster_trajectories,hbr-method Man page
plot_cluster_trajectories.hbr Man page
plot_hbr-freq.hbr Man page
plot_hbr_freq Man page
plot_hbr_freq,hbr-method Man page
plot_marker_trajectories Man page
plot_marker_trajectories,hbr-method Man page
plot_marker_trajectories.hbr Man page
print_wincl_hbr_info Source code
reconstruct_hb Man page
reconstruct_hb,SNP_time_series-method Man page
reconstruct_hb.SNP_time_series Man page
rev_map Man page
rev_map,hbr-method Man page
rev_map.hbr Man page
rowRanks2 Source code
show Man page
show,SNP_time_series-method Man page
show,hbr-method Man page
show.SNP_time_series Man page
show.hbr Man page
summary,hbr-method Man page
summary.hbr Man page
sync_to_frequencies Man page Source code
top2 Source code
validity_initialize_SNP_time_series Source code
validity_plot_hbr_freq Source code
validity_reconstruct_hb Source code
validity_sync_to_frequencies Source code
haploReconstruct documentation built on May 2, 2019, 1:46 p.m.