Description Usage Arguments Details Value Author(s) See Also
The method summarizes information of the reconstructed haplotype-blocks for a chromosome.
1 2 | ## S4 method for signature 'hbr'
summary(object, min.marker = 1)
|
object |
object of class |
min.marker |
numeric specifying the minimum number of markers a haplotype-block to be reported. NOTE: IDs of haplotype-blocks in the provided summary are identical to the IDs of the previously identified blocks. |
The method operates on hbr
objects and summarizes information of
reconstructed haplotype-blocks
data.table with row entries for each reconstructed haplotype-block and columns for: chr (chromosome), id (numbering of selected blocks), n.marker (number of markers in the reconstructed block), spos, epos (starting and end position of the block), len.pos (length of the block in bp), MperMb (number of markers per Mb), swin, ewin (starting and end window of the block)
Susanne U. Franssen
hbr
ex_dat
plot.hbr
plot_cluster_trajectories
plot_marker_trajectories
map
rev_map
markers
plot_hbr_freq
inspect_window
inspect_window_PCA
inspect_window_avLink
inspect_window_dbScan
number_hbr
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