plot-hbr-method: Method to visualize reconstructed haplotype-blocks
In haploReconstruct: Reconstruction of Haplotype-Blocks from Time Series Data

Description Usage Arguments Details Author(s) See Also

The method visualizes reconstructed haplotype-blocks for a chromosome.

## S4 method for signature 'hbr'
plot(x, min.marker = 1, xlab = "Genomic position [Mb]",
  ylab = "Reconstructed haplotype-block", main = "default", col = "black",
  lwd = 4, hline = 10, indicate_shared = F, addPoints = F,
  hbr_plot = NULL, ...)

`x`	object of class `hbr` containing the results of reconstructed haplotype blocks for visualization.
`min.marker`	numeric specifying the minimum number of markers a haplotype-block should contain in order to be visualized.
`xlab`	Label of the x-axis with the default value 'Genomic position [MB]'.
`ylab`	Label of the y-axis with the default value 'Reconstructe haplotype-block'.
`main`	Plot title (default: "Chromosome XX").
`col`	Color of the lines representing the haplotype-blocks (default: "black").
`lwd`	Line width of the lines representing the haplotype-blocks (default: 4).
`hline`	Distance between horizontal lines plotted for orientation (default: 10).
`indicate_shared`	logical value specifying if "spurious" markers that are identical between pairs of haplotype-blocks should be indicated. This function is usefull for inspecting results and deciding whether all identified blocks are all independent or maybe reconstruction parameters should be changed.
`addPoints`	logical value indicating if for each reconstructed block markers should additionally be indicated.
`hbr_plot`	boolean vector of length the number of reconstructed bocks indicating which ones should be plotted
`...`	arguments of the generic plot method.