Description Usage Arguments Details Author(s) See Also
Method to visualize the trajectories for all markers in a haplotype-block
1 2 3 | ## S4 method for signature 'hbr'
plot_marker_trajectories(object, hbr_id, ylim = c(0, 1),
loc.col = T, tp.cor = T)
|
object |
object of class |
hbr_id |
the id of the haplotype-block, for which the marker trajectories should be plotted. |
ylim |
numeric vector with two elements specifying the limits of the y-axis. |
loc.col |
boolean indicating if trajectories should be coloured ranging from red over blue to yellow according to their location on the chromosome (default: TRUE). |
tp.cor |
Boolean indicating if only the time points used for calaculating
correlations |
The method operates on hbr
objects and plots the trajectories
of all markers in a haplotype-block in all replicates.
Note: As blocks can span a wide range along the genome, it is not expected that
trajectories within a block stay very similar. Changing location along the genome
can be indicated with loc.col=T.
Susanne U. Franssen
hbr
ex_dat
summary.hbr
plot.hbr
plot_cluster_trajectories
map
rev_map
markers
plot_hbr_freq
inspect_window
inspect_window_PCA
inspect_window_avLink
inspect_window_dbScan
number_hbr
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