plot_marker_trajectories-hbr-method: Method to visualize the trajectories for all markers in a...
In haploReconstruct: Reconstruction of Haplotype-Blocks from Time Series Data

Description Usage Arguments Details Author(s) See Also

Method to visualize the trajectories for all markers in a haplotype-block

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## S4 method for signature 'hbr'
plot_marker_trajectories(object, hbr_id, ylim = c(0, 1),
  loc.col = T, tp.cor = T)

`object`	object of class `hbr`
`hbr_id`	the id of the haplotype-block, for which the marker trajectories should be plotted.
`ylim`	numeric vector with two elements specifying the limits of the y-axis.
`loc.col`	boolean indicating if trajectories should be coloured ranging from red over blue to yellow according to their location on the chromosome (default: TRUE).
`tp.cor`	Boolean indicating if only the time points used for calaculating correlations `use.libs` are shown (tp.cor=T) or all time points present in the data set are shown (tp.cor=F).

The method operates on hbr objects and plots the trajectories of all markers in a haplotype-block in all replicates. Note: As blocks can span a wide range along the genome, it is not expected that trajectories within a block stay very similar. Changing location along the genome can be indicated with loc.col=T.

Susanne U. Franssen

hbr ex_dat summary.hbr plot.hbr plot_cluster_trajectories map rev_map markers plot_hbr_freq inspect_window inspect_window_PCA inspect_window_avLink inspect_window_dbScan number_hbr