Man pages for haploReconstruct
Reconstruction of Haplotype-Blocks from Time Series Data
| ex_dat | Example data set |
| hbr-class | An S4 class storing results from haplotype-block... |
| initialize_SNP_time_series | Initialization of time series data as input for haplotype... |
| inspect_window_avLink-hbr-method | Hierachical clustering of haplotype-block marker for a window |
| inspect_window_dbScan-hbr-method | Clustering with the dbscan algorithm |
| inspect_window-hbr-method | Haplotype-block marker inspection for a window |
| inspect_window_PCA-hbr-method | PCA of haplotype-block marker for a window |
| map-hbr-method | Map from reconstructed haplotype-blocks to windows |
| markers-hbr-method | Markers of the specified reconstructed haplotype-block |
| number_hbr-hbr-method | The number of reconstructed haplotype-block |
| plot_cluster_trajectories-hbr-method | Method to visualize the trajectories for all identified... |
| plot_hbr_freq-hbr-method | Plots frequencies of a reconstructed haplotype-block along... |
| plot-hbr-method | Method to visualize reconstructed haplotype-blocks |
| plot_marker_trajectories-hbr-method | Method to visualize the trajectories for all markers in a... |
| reconstruct_hb-SNP_time_series-method | Reconstruction of haplotype-blocks |
| rev_map-hbr-method | Map from windows to reconstructed haplotype-blocks |
| show-hbr-method | Display of a hbr object |
| show-SNP_time_series-method | Display of a SNP_time_series object |
| SNP_time_series-class | An S4 class storing time series data |
| summary-hbr-method | Method to summarize information of reconstructed... |
| sync_to_frequencies | Data input from a sync file |
