Nothing
R/getGeneSeq.R
In hoardeR: Collect and Retrieve Annotation Data for Various Genomic Data Using Different Webservices
getGeneSeq <- function(chr, start, end, organism){
# Options:
# Organism: susScr3
reply <- scan(paste("http://genome.ucsc.edu/cgi-bin/das/",organism,"/dna?segment=chr",chr,":",start,",",end,sep=""),what="raw")
getStart <- which(grepl("length=",reply))+1
getEnd <- which(grepl("/DNA",reply))-1
paste(reply[getStart:getEnd],collapse="")
}
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hoardeR documentation built on May 2, 2019, 5:15 a.m.
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getGeneSeq <- function(chr, start, end, organism){
# Options:
# Organism: susScr3
reply <- scan(paste("http://genome.ucsc.edu/cgi-bin/das/",organism,"/dna?segment=chr",chr,":",start,",",end,sep=""),what="raw")
getStart <- which(grepl("length=",reply))+1
getEnd <- which(grepl("/DNA",reply))-1
paste(reply[getStart:getEnd],collapse="")
}
Try the hoardeR package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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