apply.term.filters: Apply a list of term filters to a given plotting context

In hpoPlot: Functions for Plotting HPO Terms

Description

Apply a list of term filters to a given plotting context

Usage

apply.term.filters(hpo.terms, plotting.context, term.filters,
  starting.terms = NULL)

Arguments

hpo.terms	R-Object representation of HPO
plotting.context	List object with hpo.phenotypes slot for list of character vectors of terms
term.filters	List of term filtering functions
starting.terms	Character vector of HPO term codes to filter. Defaults to all terms in the ‘hpo.phenotypes’ element of plotting.context, if it is present

Value

Character vector of terms

Examples

data(hpo.terms)
apply.term.filters(hpo.terms=hpo.terms, plotting.context=list(
hpo.phenotypes=list(Case1="HP:0001873")), term.filters=list(remove.links))

Example output

[1] "HP:0001873"

hpoPlot documentation built on May 2, 2019, 5:52 a.m.