swap.out.alt.ids: Remove alternate/deprecated HPO term IDs and swap for new...

In hpoPlot: Functions for Plotting HPO Terms

Description

Remove alternate/deprecated HPO term IDs and swap for new ones

Usage

swap.out.alt.ids(hpo.terms, terms, remove.dead = FALSE)

Arguments

hpo.terms	R-Object representation of HPO
terms	Character vector of HPO terms
remove.dead	Boolean to indicate whether to strip out terms which can't be found in the given hpo.terms database argument

Value

A directed adjacency matrix of terms based on DAG structure of HPO, whereby each term is considered adjacent to it's MRCA in terms

Examples

data(hpo.terms)
swap.out.alt.ids(hpo.terms, c("HP:0001873"))

hpoPlot documentation built on May 2, 2019, 5:52 a.m.