get.case.term.matrix: Get a matrix with columns of hpo terms and rows of patients,

In hpoPlot: Functions for Plotting HPO Terms

Description

Get a matrix with columns of hpo terms and rows of patients,

Usage

get.case.term.matrix(hpo.phenotypes, columns = NULL)

Arguments

hpo.phenotypes	List of character vectors of HPO terms. Result includes only terms which are explicitly present in the list items, so if you wish the result to include even terms which are implicitly present, lapply get.ancestors to the argument before passing it to this function
columns	Force result to have these exact columns, entering F for terms which aren't present

Value

Logical matrix - entry for a patient/hpo term = T if the patient has the term and F otherwise.

Examples

get.case.term.matrix(list(Patient1=c("HP:0001873")))

hpoPlot documentation built on May 2, 2019, 5:52 a.m.