get.term.descendancy.matrix: Get logical descendancy matrix for set of terms

In hpoPlot: Functions for Plotting HPO Terms

Description

Get logical descendancy matrix for set of terms

Usage

get.term.descendancy.matrix(hpo.terms, terms = NULL, rows = terms,
  cols = terms)

Arguments

hpo.terms	R-Object representation of HPO
terms	Character vector of HPO terms
rows	Rows for resultant matrix (defaults to terms)
cols	Cols for resultant matrix (defaults to terms)

Value

A logical descendancy matrix of terms by terms based on DAG structure of HPO, where by the row term is an ancestor of the column term if result[row.term,col.term] == TRUE

Examples

data(hpo.terms)
get.term.descendancy.matrix(hpo.terms, c("HP:0001873", "HP:0011877"))

Example output

           HP:0001873 HP:0011877
HP:0001873      FALSE      FALSE
HP:0011877      FALSE      FALSE

hpoPlot documentation built on May 2, 2019, 5:52 a.m.