get.term.frequencies: Get frequency of each term in a set of phenotypes

In hpoPlot: Functions for Plotting HPO Terms

Description

Get frequency of each term in a set of phenotypes

Usage

get.term.frequencies(hpo.terms, hpo.phenotypes, patch.missing = FALSE)

Arguments

hpo.terms	R-Object representation of HPO
hpo.phenotypes	List of HPO term character vectors
patch.missing	Logical indicating whether to include all HPO even if they're not present in the hpo.phenotypes as if they had occurred once

Value

Numeric vector of information contents, named by corresponding HPO terms. Takes into account ancestors, in the sense that all ancestor terms implied by the phenotypes are considered 'on'

See Also

get.term.info.content

Examples

data(hpo.terms)
get.term.frequencies(hpo.terms, list("HP:0001873"))

Example output

HP:0000001 HP:0000118 HP:0001871 HP:0001872 HP:0001873 HP:0011873 
         1          1          1          1          1          1 

hpoPlot documentation built on May 2, 2019, 5:52 a.m.