Man pages for junctions
The Breakdown of Genomic Ancestry Blocks in Hybrid Lineages

calc_kCalculate the limit of the number of junctions
calculate_matFunction to calculate the maximum accurate time
estimate_timeEstimate the time since the onset of hybridization, using the...
estimate_time_diploidestimates the time since admixture, given diploid ancestry...
estimate_time_haploidestimate time using likelihood for a single chromosome
estimate_time_one_chromEstimate the time since the onset of hybridization, using the...
junctions-packageExtending The Theory of Junctions
log_likelihood_diploidcalculate the log likelihood of observing diploid ancestry...
log_likelihood_haploidlog likelihood of the time since admixture for a haploid...
number_of_junctionsCalculate the average number of junctions
number_of_junctions_backcrossCalculate the average number of junctions during backcrossing
number_of_junctions_diCalculate the expected number of junctions between two...
number_of_junctions_markersCalculate the expected total number of junctions in a...
sim_backcrossingFunction to simulate data using a back crossing scheme
sim_fin_chromIndividual Based Simulation of the accumulation of junctions
sim_inf_chromIndividual Based Simulation of the accumulation of junctions
sim_phased_unphasedIndividual Based Simulation of the accumulation of junctions
time_errorEstimate the error in the time estimate
junctions documentation built on May 27, 2021, 1:06 a.m.