View source: R/estimate_time_haploid.R
estimate_time_haploid | R Documentation |
Estimate the time since the onset of hybridization, for a haploid genome
estimate_time_haploid( ancestry_matrix, N = 1000, freq_ancestor_1 = 0.5, lower_lim = 2, upper_lim = 1000, verbose = FALSE )
ancestry_matrix |
matrix with 3 columns, column 1 = chromosome, column 2 = location in Morgan, column 3 = ancestry. |
N |
Population Size |
freq_ancestor_1 |
Frequency of ancestor 1 at t = 0 |
lower_lim |
lower limit of the optimization algorithm. Increase if the expected admixture time is relatively ancient |
upper_lim |
upper limit of the optimization algorithm. If set too large, recent admixture events can be overlooked - best to set as low as possible. |
verbose |
return verbose output |
The number of generations passed since the onset of hybridization
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