sim_fin_chrom: Individual Based Simulation of the accumulation of junctions

In junctions: The Breakdown of Genomic Ancestry Blocks in Hybrid Lineages

Individual Based Simulation of the accumulation of junctions

Description

Individual based simulation of the accumulation of junctions for a chromosome with regularly distributed markers.

Usage

sim_fin_chrom(
  pop_size = 100,
  freq_ancestor_1 = 0.5,
  total_runtime = 100,
  morgan = 1,
  seed = 42,
  R = 100
)

Arguments

pop_size	Population Size
freq_ancestor_1	Frequency of ancestor 1 at t = 0
total_runtime	Maximum time after which the simulation is to be stopped
morgan	Mean number of crossovers per meiosis (e.g. size in Morgan of the chromosome)
seed	Seed of the pseudo-random number generator
R	Number of regularly distributed markers

Value

avgJunctions

vector of the average number of junctions at time = [0, total_runtime]

Examples

cat("example sim_fin_chrom")
sim_fin_chrom(pop_size = 100, freq_ancestor_1 = 0.5,
                   total_runtime = 10, morgan = 1, seed = 42,
                   R = 100)

junctions documentation built on May 29, 2024, 6:26 a.m.