number_of_junctions: Calculate the average number of junctions

In junctions: The Breakdown of Genomic Ancestry Blocks in Hybrid Lineages

Calculate the average number of junctions

Description

Calculate the average number of junctions in a single chromosome after t generations, provided information on the initial heterozygosity, population size and the number of generations.

Usage

number_of_junctions(N = Inf, R = Inf, H_0 = 0.5, C = 1, t = 100)

Arguments

N	Population Size
R	Number of genetic markers
H_0	Frequency of heterozygosity at t = 0
C	Mean number of crossovers per meiosis (e.g. size in Morgan of the chromosome)
t	Time since admixture

Value

Estimated number of junctions at time t

Examples

jt <-  number_of_junctions(N = 100, R = 1000, H_0 = 0.5, C = 1, t = 1000)
jt2 <- number_of_junctions(N = 100, R = 1000, H_0 = 0.5, C = 1, t = 0:1000)

junctions documentation built on May 29, 2024, 6:26 a.m.