The Breakdown of Genomic Ancestry Blocks in Hybrid Lineages

MD5

README.md
NAMESPACE

DESCRIPTION

R/RcppExports.R
R/number_of_junctions_di.R
R/sim_backcrossing.R
R/log_likelihood_diploid.R
R/estimate_time_diploid.R
R/estimate_time_one_chrom.R
R/calc_K.R
R/estimate_time.R
R/number_of_junctions.R
R/number_of_junctions_backcross.R
R/sim_phased_unphased.R
R/log_likelihood_haploid.R
R/util.R
R/calculate_MAT.R
R/sim_fin_chrom.R
R/calculate_error.R
R/number_of_junctions_markers.R
R/sim_inf_chrom.R
R/estimate_time_haploid.R
src/Output.cpp

src/Makevars.win

src/random_functions.h

src/Makevars

src/main_functions.cpp

src/RcppExports.cpp

src/Fish.h

src/Output.h

src/backcrossing.cpp

src/Fish.cpp

src/estimate_time_unphased_cpp.cpp

src/estimate_time_unphased_cpp.h

src/unphased.cpp

inst/doc/junctions_vignette.Rmd
inst/doc/Overview_of_the_junctions_package.Rmd
inst/doc/junctions_vignette.html

inst/doc/junctions_vignette.R
inst/doc/phased_and_unphased_data.R
inst/doc/Overview_of_the_junctions_package.html

inst/doc/phased_and_unphased_data.html

inst/doc/phased_and_unphased_data.Rmd
inst/doc/Overview_of_the_junctions_package.R
build/vignette.rds

tests/testthat.R
tests/testthat/test-marker_dist.R
tests/testthat/test-one-chrom.R
tests/testthat/test-unphased.R
tests/testthat/test-estim_time_haploid.R
tests/testthat/test-equations.R
tests/testthat/test-backcrossing.R
tests/testthat/test-phased-error.R
tests/testthat/test-phased.R
tests/testthat/test-sims.R
vignettes/junctions_vignette.Rmd
vignettes/Overview_of_the_junctions_package.Rmd
vignettes/phased_and_unphased_data.Rmd
man/sim_fin_chrom.Rd
man/number_of_junctions_markers.Rd
man/sim_inf_chrom.Rd
man/number_of_junctions_backcross.Rd
man/number_of_junctions.Rd
man/sim_backcrossing.Rd
man/number_of_junctions_di.Rd
man/estimate_time_haploid.Rd
man/time_error.Rd
man/estimate_time_one_chrom.Rd
man/calc_k.Rd
man/sim_phased_unphased.Rd
man/estimate_time_diploid.Rd
man/junctions-package.Rd
man/log_likelihood_diploid.Rd
man/estimate_time.Rd
man/calculate_mat.Rd
man/log_likelihood_haploid.Rd
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