R/RcppExports.R

In junctions: The Breakdown of Genomic Ancestry Blocks in Hybrid Lineages

# Generated by using Rcpp::compileAttributes() -> do not edit by hand
# Generator token: 10BE3573-1514-4C36-9D1C-5A225CD40393

simulate_backcrossing_cpp <- function(pop_size, freq_ancestor_1, total_runtime, size_in_morgan, number_of_markers, time_points, seed) {
    .Call('_junctions_simulate_backcrossing_cpp', PACKAGE = 'junctions', pop_size, freq_ancestor_1, total_runtime, size_in_morgan, number_of_markers, time_points, seed)
}

estimate_time_cpp <- function(local_anc_matrix, locations, pop_size, freq_ancestor_1, lower_lim, upper_lim, verbose, phased, num_threads = 1L) {
    .Call('_junctions_estimate_time_cpp', PACKAGE = 'junctions', local_anc_matrix, locations, pop_size, freq_ancestor_1, lower_lim, upper_lim, verbose, phased, num_threads)
}

loglikelihood_unphased_cpp <- function(local_anc_matrix, locations, pop_size, freq_ancestor_1, t, phased, verbose = FALSE, num_threads = 1L) {
    .Call('_junctions_loglikelihood_unphased_cpp', PACKAGE = 'junctions', local_anc_matrix, locations, pop_size, freq_ancestor_1, t, phased, verbose, num_threads)
}

sim_fin_chrom <- function(pop_size, freq_ancestor_1, run_time, size_in_Morgan, seed, R) {
    .Call('_junctions_sim_fin_chrom', PACKAGE = 'junctions', pop_size, freq_ancestor_1, run_time, size_in_Morgan, seed, R)
}

sim_inf_chrom <- function(pop_size, freq_ancestor_1, run_time, size_in_Morgan, markers, seed) {
    .Call('_junctions_sim_inf_chrom', PACKAGE = 'junctions', pop_size, freq_ancestor_1, run_time, size_in_Morgan, markers, seed)
}

sim_phased_unphased_cpp <- function(pop_size, freq_ancestor_1, total_runtime, size_in_morgan, markers, time_points, verbose, record_true_junctions, num_indiv_sampled, num_threads) {
    .Call('_junctions_sim_phased_unphased_cpp', PACKAGE = 'junctions', pop_size, freq_ancestor_1, total_runtime, size_in_morgan, markers, time_points, verbose, record_true_junctions, num_indiv_sampled, num_threads)
}