View source: R/log_likelihood_diploid.R

log_likelihood_diploid | R Documentation |

Calculates the log likelihood of observing the phased data, given the population size, initial heterozygosity and time since admixture

log_likelihood_diploid( local_anc_matrix, pop_size, freq_ancestor_1 = 0.5, t, phased = FALSE, num_threads = 1 )

`local_anc_matrix` |
a matrix with four columns: column 1) chromosome indicator, 2) location of marker in Morgan on respective chromosome 3) ancestry at chromosome 4) ancestry at chromosome 2. |

`pop_size` |
population size |

`freq_ancestor_1` |
Frequency of ancestor 1 at t = 0 |

`t` |
time since admixture |

`phased` |
is the data phased or not? default is false. |

`num_threads` |
number of threads, default is one thread. Set to -1 to use all available threads. |

log likelihood

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.