View source: R/log_likelihood_haploid.R

log_likelihood_haploid | R Documentation |

log likelihood of the time since admixture for a set of single chromosomes (for ex. in Yeast).

log_likelihood_haploid(ancestry_matrix, N = 1000, freq_ancestor_1 = 0.5, t = 2)

`ancestry_matrix` |
matrix with 3 columns, column 1 = chromosome, column 2 = location in Morgan, column 3 = ancestry. |

`N` |
Population Size |

`freq_ancestor_1` |
Frequency of ancestor 1 at t = 0 |

`t` |
time since admixture |

loglikelihood

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