API for microPop
Process-Based Modelling of Microbial Populations
| Global functions | |
|---|---|
| Acetogens | Man page |
| Bacteroides | Man page |
| ButyrateProducers1 | Man page |
| ButyrateProducers2 | Man page |
| ButyrateProducers3 | Man page |
| LactateProducers | Man page |
| MFG | Man page |
| Methanogens | Man page |
| NoButyFibreDeg | Man page |
| NoButyStarchDeg | Man page |
| PropionateProducers | Man page |
| Xaa | Man page |
| Xh2 | Man page |
| Xsu | Man page |
| applyTraitTradeOffs | Man page Source code |
| assignNAsToMFGs | Man page Source code |
| assignStrainTraits | Man page Source code |
| checkResInfo | Man page Source code |
| checkSolution | Man page Source code |
| checkStoichiom | Man page Source code |
| combineGrowthLimFunc | Man page |
| combineGrowthLimFuncDefault | Man page Source code |
| combinePathsFunc | Man page |
| combinePathsFuncDefault | Man page Source code |
| convertFlowsToMoles | Man page Source code |
| convertStatesToMoles | Man page Source code |
| createDF | Man page Source code |
| derivsDefault | Man page Source code |
| entryRateFunc | Man page |
| entryRateFuncDefault | Man page Source code |
| extraGrowthLimFunc | Man page |
| extraGrowthLimFuncDefault | Man page Source code |
| getAllResources | Man page Source code |
| getGroupName | Man page Source code |
| getKeyRes | Man page Source code |
| getMolarStoichiom | Source code |
| getMolarYields | Source code |
| getNonBoostFrac | Man page Source code |
| getNumPaths | Man page Source code |
| getPHcorners | Man page Source code |
| getStrainPHcorners | Man page Source code |
| getStrainParamsFromFile | Man page Source code |
| getVNPlotObject | Man page Source code |
| getValues | Man page Source code |
| growthLimFunc | Man page |
| growthLimFuncDefault | Man page Source code |
| makeInflowFromSoln | Man page |
| makeNetworkMatrices | Man page Source code |
| makeParamMatrixG | Man page Source code |
| makeParamMatrixS | Man page Source code |
| massBalanceFunc | Man page |
| massBalanceFuncDefault | Man page Source code |
| meanTraitFunc | Man page Source code |
| microPop | Man page |
| microPop-package | Man page |
| microPopModel | Man page Source code |
| microbeSysInfo | Man page |
| microbeSysInfoHuman | Man page |
| microbeSysInfoRumen | Man page |
| networkDFfromMPinput | Man page Source code |
| networkDFfromMPoutput | Man page Source code |
| pHFunc | Man page |
| pHFuncDefault | Man page Source code |
| pHLimFunc | Man page |
| pHLimFuncDefault | Man page Source code |
| pHcentreOfMass | Man page Source code |
| plotMicrobes | Man page Source code |
| plotResources | Man page Source code |
| plotTraitChange | Man page Source code |
| productionFunc | Man page |
| productionFuncDefault | Man page Source code |
| quickPlot | Man page Source code |
| quickPlot1 | Man page Source code |
| quickPlot2 | Man page Source code |
| rateFuncs | Man page |
| rateFuncsDefault | Man page |
| removalRateFunc | Man page |
| removalRateFuncDefault | Man page Source code |
| replaceListItems | Man page Source code |
| reshapeFlowMat | Man page Source code |
| resourceSysInfo | Man page |
| resourceSysInfoHuman | Man page |
| resourceSysInfoRumen | Man page |
| runMicroPopExample | Man page Source code |
| strainParams | Man page |
| subsetFunc | Man page Source code |
| sumConcOverStrains | Man page Source code |
| sumFlowOverStrains | Man page Source code |
| sumFlowsOverPaths | Man page Source code |
| systemInfoMicrobesPhyto | Man page |
| systemInfoMicrobesVirus | Man page |
| systemInfoResourcesPhyto | Man page |
| systemInfoResourcesVirus | Man page |
| uptakeFunc | Man page |
| uptakeFuncDefault | Man page Source code |
| waterUptakeRatio | Man page Source code |
