cal_met_snp: 'cal_met_snp'

In minSNPs: Resolution-Optimised SNPs Searcher

cal_met_snp

Description

cal_met_snp is used to calculate the metric at each position

Usage

cal_met_snp(position, metric, seqc, prepend_position = c(), ...)

Arguments

position	position to check
metric	either 'simpson' or 'percent'
seqc	list of sequences, either passed directly from process_allele or read_fasta or equivalence
prepend_position	is the position to be added to the
...	other parameters as needed

Value

return the value at that position, as well as base pattern for next iteration.

minSNPs documentation built on May 29, 2024, 2:48 a.m.