generate_kmer_search_string: 'generate_kmer_search_string'
In minSNPs: Resolution-Optimised SNPs Searcher
View source: R/search_string_generation.R
generate_kmer_search_string R Documentation
generate_kmer_search_string
Description
generate_kmer_search_string generate the search strings
to detect genes' presence
Usage
generate_kmer_search_string(
gene_seq,
k,
id_prefix = NULL,
bp = MulticoreParam()
)
Arguments
gene_seq
sequences to generate k_mers from
k
kmer length
id_prefix
prefix for the gene id
bp
BiocParallel backend to use
Value
a dataframe containing the search strings
minSNPs documentation built on May 29, 2024, 2:48 a.m.
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View source: R/search_string_generation.R
| generate_kmer_search_string | R Documentation |
generate_kmer_search_string
Description
generate_kmer_search_string generate the search strings
to detect genes' presence
Usage
generate_kmer_search_string(
gene_seq,
k,
id_prefix = NULL,
bp = MulticoreParam()
)
Arguments
gene_seq |
sequences to generate k_mers from |
k |
kmer length |
id_prefix |
prefix for the gene id |
bp |
BiocParallel backend to use |
Value
a dataframe containing the search strings
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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