iterate_through: 'iterate_through'

In minSNPs: Resolution-Optimised SNPs Searcher

iterate_through

Description

iterate_through is used to calculate the metric at each position

Usage

iterate_through(metric, seqc, bp = MulticoreParam(), ...)

Arguments

metric	either 'simpson' or 'percent'
seqc	list of sequences, either passed directly from process_allele or read_fasta or equivalence
bp	BiocParallel backend. Rule of thumbs: use MulticoreParam(workers = ncpus - 2)
...	other parameters as needed

Value

return a dataframe containing the position and result.

minSNPs documentation built on May 29, 2024, 2:48 a.m.