API for minSNPs
Resolution-Optimised SNPs Searcher
| Global functions | |
|---|---|
| .onAttach | Source code |
| binomial_naive_bayes | Man page |
| branch_and_search | Man page Source code |
| cal_fn | Man page Source code |
| cal_fp | Man page Source code |
| cal_met_snp | Man page Source code |
| calculate_mcc | Man page Source code |
| calculate_mcc_multi | Man page Source code |
| calculate_percent | Man page Source code |
| calculate_simpson | Man page Source code |
| calculate_simpson_by_group | Man page Source code |
| calculate_state | Man page |
| calculate_variant_within_group | Man page Source code |
| check_fasta_meta_mapping | Man page Source code |
| check_meta_target | Man page Source code |
| check_multistate | Man page Source code |
| check_percent | Man page Source code |
| coef.binomial_naive_bayes | Man page Source code |
| combine_fastq_search_result | Man page Source code |
| combine_search_string_result | Man page Source code |
| combine_search_string_result_from_files | Man page Source code |
| combine_search_string_result_from_list | Man page Source code |
| estimate_coverage | Man page Source code |
| extend_length | Man page Source code |
| find_optimised_snps | Man page Source code |
| flag_allele | Man page Source code |
| flag_position | Man page Source code |
| full_merge | Man page Source code |
| full_merge_1 | Man page Source code |
| generate_kmer_search_string | Man page Source code |
| generate_kmers | Man page Source code |
| generate_pattern | Man page Source code |
| generate_prioritisation | Man page Source code |
| generate_snp_search_string | Man page Source code |
| get_all_process_methods | Man page Source code |
| get_binomial_tables | Man page Source code |
| get_metric_fun | Man page |
| get_positions_to_search | Man page Source code |
| get_snps_set | Man page Source code |
| get_usual_length | Man page Source code |
| identify_overlaps | Man page Source code |
| infer_from_combined | Man page Source code |
| iterate_merge | Man page Source code |
| iterate_through | Man page |
| map_profile_to_target | Man page Source code |
| match_count | Man page Source code |
| mcc_calculation | Man page Source code |
| merge_fasta | Man page Source code |
| output_parsed | Man page Source code |
| output_result | Man page Source code |
| output_to_files | Man page Source code |
| parse_group_mcc | Man page Source code |
| parse_group_mcc_multi | Man page Source code |
| predict.binomial_naive_bayes | Man page Source code |
| predict_balk | Man page Source code |
| print.binomial_naive_bayes | Man page |
| process_allele | Man page Source code |
| process_kmer_result | Man page Source code |
| process_result_file | Man page Source code |
| process_snp_result | Man page Source code |
| profile_to_group_result | Man page Source code |
| read_fasta | Man page Source code |
| read_sequences_from_fastq | Man page Source code |
| remove_dup_isolate | Man page Source code |
| remove_snp_conflict | Man page Source code |
| resolve_IUPAC_missing | Man page Source code |
| reverse_complement | Man page Source code |
| scramble_sequence | Man page Source code |
| search_from_fastq_reads | Man page Source code |
| search_from_reads | Man page Source code |
| select_n_set_i_depth | Man page Source code |
| sequence_reads_match_count | Man page Source code |
| summarise_result | Man page Source code |
| summary.binomial_naive_bayes | Man page Source code |
| train_balk | Man page Source code |
| transform_snp | Man page Source code |
| translate_position | Man page Source code |
| view_mcc | Man page Source code |
| view_mcc_multi | Man page Source code |
| view_percent | Man page Source code |
| view_simpson | Man page Source code |
| write_fasta | Man page Source code |
