sequence_reads_match_count: 'sequence_reads_match_count'
In minSNPs: Resolution-Optimised SNPs Searcher
View source: R/search_from_reads.R
sequence_reads_match_count R Documentation
sequence_reads_match_count
Description
sequence_reads_match_count look for the search sequences in reads and return the matches indexes and mean qualities
Usage
sequence_reads_match_count(search_sequence, reads, qualities)
Arguments
search_sequence
the search sequence to look for where '.' stands for any character.
reads
the sequences reads to search for.
qualities
the qualities of each bases in the reads.
Value
will return a list containing for each read: -
count, mean_quality, indexes
minSNPs documentation built on May 29, 2024, 2:48 a.m.
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View source: R/search_from_reads.R
| sequence_reads_match_count | R Documentation |
sequence_reads_match_count
Description
sequence_reads_match_count look for the search sequences in reads and return the matches indexes and mean qualities
Usage
sequence_reads_match_count(search_sequence, reads, qualities)
Arguments
search_sequence |
the search sequence to look for where '.' stands for any character. |
reads |
the sequences reads to search for. |
qualities |
the qualities of each bases in the reads. |
Value
will return a list containing for each read: - count, mean_quality, indexes
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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