calculate_variant_within_group: 'identify_group_variant_breakdown'
In minSNPs: Resolution-Optimised SNPs Searcher
calculate_variant_within_group R Documentation
identify_group_variant_breakdown
Description
calculate_variant_within_group is used to identify proportion of different samples
having the same profile.
Usage
calculate_variant_within_group(pattern, meta, target, get_count = FALSE)
Arguments
pattern
list of sequences' pattern (profile)
meta
metadata of the sequences
target
column name of the target group
get_count
whether to return the count of samples rather than the raw number, default to FALSE.
Value
Will return the Simpson's index of the list of patterns.
minSNPs documentation built on May 29, 2024, 2:48 a.m.
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| calculate_variant_within_group | R Documentation |
identify_group_variant_breakdown
Description
calculate_variant_within_group is used to identify proportion of different samples
having the same profile.
Usage
calculate_variant_within_group(pattern, meta, target, get_count = FALSE)
Arguments
pattern |
list of sequences' pattern (profile) |
meta |
metadata of the sequences |
target |
column name of the target group |
get_count |
whether to return the count of samples rather than the raw number, default to FALSE. |
Value
Will return the Simpson's index of the list of patterns.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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