process_snp_result: 'process_snp_result'

In minSNPs: Resolution-Optimised SNPs Searcher

process_snp_result

Description

process_snp_result processes the SNP result from infer_from_combined

Usage

process_snp_result(
  partial_result,
  search_table,
  count_measure = "n_reads",
  ...
)

Arguments

partial_result	the result from infer_from_combined with only SNP
search_table	a dataframe with the following columns: - "id","type","sequence","strand","result","extra","match_ref_seq"
count_measure	the column name of the count measure to use for removing the conflicts
...	ignored

Value

a list containing: - result: a dataframe containing the following columns: - type, rank, result, reads_count, proportion_matched, pass_filter, proportion_scheme_found, details - snps_found: a vector containing the SNPs ID that have been identified without conflict - proportion_snps_found: the proportion of SNPs found without conflict

minSNPs documentation built on May 29, 2024, 2:48 a.m.