R/plot.rcc.R

In mixOmics: Omics Data Integration Project

############################################################################################################
# Authors:
#   Ignacio Gonzalez, Genopole Toulouse Midi-Pyrenees, France
#   Kim-Anh Le Cao, French National Institute for Agricultural Research and
# ARC Centre of Excellence ins Bioinformatics, Institute for Molecular Bioscience, University of Queensland, Australia
#   Sebastien Dejean, Institut de Mathematiques, Universite de Toulouse et CNRS (UMR 5219), France
#
# created: 2009
# last modified:
#
# Copyright (C) 2009
#
# This program is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License
# as published by the Free Software Foundation; either version 2
# of the License, or (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
#############################################################################################################


# Copyright (C) 2009
# Sebastien Dejean, Institut de Mathematiques, Universite de Toulouse et CNRS (UMR 5219), France
# Ignacio Gonzalez, Genopole Toulouse Midi-Pyrenees, France
# Kim-Anh Le Cao, French National Institute for Agricultural Research and 
# ARC Centre of Excellence ins Bioinformatics, Institute for Molecular Bioscience, University of Queensland, Australia
#
# This program is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License
# as published by the Free Software Foundation; either version 2
# of the License, or (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.


plot.rcc <-
function(x, scree.type = c("pointplot", "barplot"), ...) 
{

    scree.type = match.arg(scree.type)
    if (scree.type == "pointplot") {
        plot(x$cor, xlab = "Dimension", ylim = c(0, 1),
        ylab = "Canonical correlation", ...)
    }
    else {
        barplot(x$cor, xlab = "Dimension", ylim = c(0, 1),
        ylab = "Canonical correlation", ...)
    }
}