Files in moveHMM

Animal Movement Modelling using Hidden Markov Models

README.md R/RcppExports.R R/getPlotData.R R/predictStationary.R R/plotStates.R R/turnAngle.R R/parDef.R R/plot_moveHMM.R R/logBeta.R R/exGen.R R/plotPR.R R/nLogLike.R R/plot_moveData.R R/allProbs.R R/viterbi.R R/CI.R R/prepData.R R/summary_moveData.R R/angleCI.R R/logAlpha.R R/moveHMM.R R/n2w.R R/moveData.R R/pseudoRes.R R/w2n.R R/plotSat.R R/print_moveHMM.R R/stateProbs.R R/plotStationary.R R/AIC_moveHMM.R R/predictTPM.R R/stationary.R R/simData.R R/utils.R R/fitHMM.R inst/doc/moveHMM-custom-plots.pdf inst/doc/moveHMM-example.R inst/doc/moveHMM-example.Rmd inst/doc/moveHMM-custom-plots.R inst/doc/moveHMM-starting-values.pdf inst/doc/moveHMM-guide.pdf inst/doc/moveHMM-guide.R inst/doc/moveHMM-starting-values.R inst/doc/moveHMM-example.pdf tests/testthat.R tests/testthat/test_logAlpha.R tests/testthat/test_parDef.R tests/testthat/test_moveData.R tests/testthat/test_n2w.R tests/testthat/test_fitHMM.R tests/testthat/test_allProbs.R tests/testthat/test_turnAngle.R tests/testthat/test_densities.R tests/testthat/test_moveHMM.R tests/testthat/test_nLogLike.R tests/testthat/test_viterbi.R tests/testthat/test_simData.R tests/testthat/test_trMatrix_rcpp.R tests/testthat/test_stateProbs.R tests/testthat/test_prepData.R tests/testthat/test_w2n.R tests/testthat/test_CI.R vignettes/moveHMM-example.Rmd vignettes/step_angle_figure.pdf vignettes/struct.pdf man/pseudoRes.Rd man/viterbi.Rd man/logAlpha.Rd man/elk_data.Rd man/summary.moveData.Rd man/plotSat.Rd man/predictTPM.Rd man/logBeta.Rd man/dwrpcauchy_rcpp.Rd man/getPalette.Rd man/prepData.Rd man/dweibull_rcpp.Rd man/simData.Rd man/w2n.Rd man/dlnorm_rcpp.Rd man/plotStationary.Rd man/exGen.Rd man/moveData.Rd man/plot.moveHMM.Rd man/trMatrix_rcpp.Rd man/plot.moveData.Rd man/plotStates.Rd man/nLogLike.Rd man/AIC.moveHMM.Rd man/is.moveData.Rd man/haggis_data.Rd man/getPlotData.Rd man/parDef.Rd man/n2w.Rd man/stationary.Rd man/is.moveHMM.Rd man/plotPR.Rd man/moveHMM.Rd man/dgamma_rcpp.Rd man/allProbs.Rd man/predictStationary.Rd man/print.moveHMM.Rd man/dexp_rcpp.Rd man/nLogLike_rcpp.Rd man/CI.Rd man/fitHMM.Rd man/turnAngle.Rd man/stateProbs.Rd man/example.Rd man/angleCI.Rd man/dvm_rcpp.Rd