Description Usage Arguments Value References See Also
Calculate linkage disequilibrium for multiple multi-allelic measures, including Lewontin's D, W, and correlation.
1 | mpcalcld(object)
|
object |
Object of class |
Original object with additional component ld consisting of separate matrices for each different measure.
W |
Related to Chi-square test for independence (measure of non-centrality) |
LewontinD |
Lewontin's D' statistic |
delta2 |
Delta-squared statistic |
r2 |
Correlation between markers |
Zhao H, Nettleton D, Soller M and JCM Dekkers (2005) Evaluation of linkage disequilibrium measures between multi-allelic markers as predictors of linkage disequilibrium between markers and QTL. Genet Res Camb 86:77-87.
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