Plot summary of mpcross object
Plots summary of phenotypes and genetic map for mpcross object. If calculated, plots a heatmap of recombination fraction estimates and transformed LOD scores with legend.
Object of class
Selected chromosomes. Default is all
Additional arguments to plot functions
Phenotype distributions are plotted as histograms or barplots depending on the variable type.
Genetic maps are plotted using a version of
plotlink.map for all genetic maps included in the
object (may be both a simulated version and an estimated
If recombination fractions have been estimated, a heatmap with recombination fraction estimates below the diagonal and scaled LOD scores above the diagonal is also plotted. LOD scores are transformed to 2^(-(LOD/4+1)) in order to be on the same scale as the theta values.
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