plotlink.map: Plots linkage maps

In mpMap: Multi-parent RIL genetic analysis

Description

Plot linkage map (either as input object or as stored in mpcross object). Can also highlight QTL regions when used with qtlmap function.

Usage

  plotlink.map(object, chr, max.dist, marker.names = TRUE,
    tick = FALSE, squash = TRUE, colqtl = "red", ...)

Arguments

object	Either mpcross or map object
chr	Chromosomes to plot
max.dist	Plotting paramters. See link.map.cross
marker.names	Whether to plot marker names
tick	Plotting parameters. See link.map.cross
squash	Plotting parameters. See link.map.cross
colqtl	Color to plot QTL regions. See qtlmap
...	Additional arguments

Value

Modification of link.map.cross function from wgaim to allow more general input objects and to highlight regions around QTL. If any markers are labelled "QTLx" then they will be plotted in a different color.

See Also

link.map.cross, qtlmap

mpMap documentation built on May 29, 2017, 2:50 p.m.