plot.mpprob: Plot summary of founder probabilities and haplotype blocks

In mpMap: Multi-parent RIL genetic analysis

Description

Plot the percentage of each chromosome inherited from each founder

Usage

  ## S3 method for class 'mpprob'
 plot(x, chr, nlines, ...)

Arguments

x	Object of class mpprob
chr	Chromosomes to plot. Default is all
nlines	Number of lines to select to show founder ancestry. Default is all
...	Additional arguments to plot function

Value

Barplot of the percentage of each founder on each chromosome; individual heatmaps of which chunks of each chromosome are inherited from each founder.#'

See Also

mpprob, summary.mpprob, heatmap_2

Examples

sim.map <- sim.map(len=rep(100, 2), n.mar=11, include.x=FALSE, eq.spacing=TRUE)
sim.ped <- sim.mpped(4, 1, 500, 6, 1)
sim.dat <- sim.mpcross(map=sim.map, pedigree=sim.ped, qtl=matrix(data=c(1, 10, .4, 0, 0, 0, 1, 70, 0, .35, 0, 0), nrow=2, ncol=6, byrow=TRUE), seed=1)
mpp.dat <- mpprob(sim.dat, program="qtl")
plot(mpp.dat)

mpMap documentation built on May 29, 2017, 2:50 p.m.