rassocG: Generation of Points Associated in the Type G Sense with a...

In nnspat: Nearest Neighbor Methods for Spatial Patterns

Generation of Points Associated in the Type G Sense with a Given Set of Points

Description

An object of class "SpatPatterns".

Generates n_2 2D points associated with the given set of points (i.e. reference points) X_1 in the type G fashion with the parameter sigma which is a positive real number representing the variance of the Gaussian marginals. The generated points are intended to be from a different class, say class 2 (or X_2 points) than the reference (i.e. X_1 points, say class 1 points, denoted as X1 as an argument of the function), say class 1 points). To generate n_2 (denoted as n2 as an argument of the function)X_2 points, n_2 of X_1 points are randomly selected (possibly with replacement) and for a selected X1 point, say x_{1ref}, a new point from the class 2, say x_{2new}, is generated from a bivariate normal distribution centered at x_{1ref} where the covariance matrix of the bivariate normal is a diagonal matrix with sigma in the diagonals. That is, x_{2new} = x_{1ref}+V where V \sim BVN((0,0),σ I_2) with I_2 being the 2 \times 2 identity matrix. Note that, the level of association increases as sigma decreases, and the association vanishes when sigma goes to infinity.

For type G association, it is recommended to take σ ≤ 0.10 times length of the shorter edge of a rectangular study region, or take r_0 = 1/(k √{\hat ρ}) with the appropriate choice of k to get an association pattern more robust to differences in relative abundances (i.e. the choice of k implies σ ≤ 0.10 times length of the shorter edge to have alternative patterns more robust to differences in sample sizes). Here \hat ρ is the estimated intensity of points in the study region (i.e., # of points divided by the area of the region).

Type G association is closely related to Types C and U association, see the functions rassocC and rassocU and the other association types. In the type C association pattern the new point from the class 2, x_{2new}, is generated (uniform in the polar coordinates) within a circle centered at x_{1ref} with radius equal to r_0, in type U association pattern x_{2new} is generated similarly except it is uniform in the circle. In type I association, first a Uniform(0,1) number, U, is generated. If U ≤ p, x_{2new} is generated (uniform in the polar coordinates) within a circle with radius equal to the distance to the closest X_1 point, else it is generated uniformly within the smallest bounding box containing X_1 points.

See \insertCiteceyhan:serra-2014;textualnnspat for more detail.

Usage

rassocG(X1, n2, sigma)

Arguments

X1	A set of 2D points representing the reference points, also referred as class 1 points. The generated points are associated in a type G sense with these points.
n2	A positive integer representing the number of class 2 points to be generated.
sigma	A positive real number representing the variance of the Gaussian marginals, where the bivariate normal distribution has covariance BVN((0,0),sigma*I_2) with I_2 being the 2 \times 2 identity matrix.

Value

A list with the elements

pat.type	="ref.gen" for the bivariate pattern of association of class 2 points with the reference points (i.e. X_1), indicates reference points are required to be entered as an argument in the function
type	The type of the point pattern
parameters	The variance of the Gaussian marginals controlling the level of association, where the bivariate normal distribution has covariance σ I_2 with I_2 being the 2 \times 2 identity matrix.
gen.points	The output set of generated points (i.e. class 2 points) associated with reference (i.e. X_1 points)
ref.points	The input set of reference points X_1, i.e., points with which generated class 2 points are associated.
desc.pat	Description of the point pattern
mtitle	The "main" title for the plot of the point pattern
num.points	The vector of two numbers, which are the number of generated class 2 points and the number of reference (i.e. X_1) points.
xlimit,ylimit	The possible ranges of the x- and y-coordinates of the generated and the reference points

Author(s)

Elvan Ceyhan

References

\insertAllCited

See Also

rassocI, rassocG, rassocC, and rassoc

Examples

n1<-20; n2<-1000;  #try also n1<-10; n2<-1000;

stdev<-.05  #try also .075 and .15
#with default bounding box (i.e., unit square)
X1<-cbind(runif(n1),runif(n1))   #try also X1<-1+cbind(runif(n1),runif(n1))

Xdat<-rassocG(X1,n2,stdev)
Xdat
summary(Xdat)
plot(Xdat,asp=1)
plot(Xdat)

#sigma adjusted with the expected NN distance
x<-range(X1[,1]); y<-range(X1[,2])
ar<-(y[2]-y[1])*(x[2]-x[1]) #area of the smallest rectangular window containing X1 points
rho<-n1/ar
stdev<-1/(4*sqrt(rho)) #r0=1/(2rho) where \code{rho} is the intensity of X1 points
Xdat<-rassocG(X1,n2,stdev)
Xdat
summary(Xdat)
plot(Xdat,asp=1)
plot(Xdat)

nnspat documentation built on Aug. 30, 2022, 9:06 a.m.