R/np.copula.R

Defines functions .npcopula_eval npcopula.default npcopula.formula plot.npcopula as.data.frame.npcopula se.npcopula predict.npcopula .npcopula_predict_newdata_to_u fitted.npcopula summary.npcopula print.npcopula .npcopula_add_interval_columns .npcopula_interval_payload .npcopula_bootstrap_values .npcopula_boot_eval_weighted .npcopula_boot_counts .npcopula_eval_xgrid .npcopula_asymptotic_se .npcopula_marginal_density_product .npcopula_training_data .npcopula_plot_all .npcopula_draw_surface_base .npcopula_density_companion .npcopula_clip_z_list_for_display .npcopula_clip_z_for_display .npcopula_validate_zlim .npcopula_default_plot_main .npcopula_empirical_eval .npcopula_grid_eval .npcopula_marginal_bw .npcopula_object .npcopula_eval_expanded_grid .npcopula_progress_total .npcopula_progress_step .npcopula_progress_begin .npcopula_grid_dim .npcopula_make_auto_u .npcopula_validate_u .npcopula_validate_er_quasi_inv .npcopula_validate_n_quasi_inv .npcopula_validate_neval .npcopula_validate_evaluation .npcopula_validate_target npcopula

Documented in as.data.frame.npcopula fitted.npcopula npcopula npcopula.default npcopula.formula plot.npcopula predict.npcopula print.npcopula se.npcopula summary.npcopula

## Kernel copula estimation.  The worker preserves the historical data-frame
## return columns while the public wrapper adds formula routing and S3 metadata.

npcopula <- function(bws, ...) {
  if (!missing(bws)) {
    UseMethod("npcopula", bws)
  } else {
    UseMethod("npcopula", NULL)
  }
}

.npcopula_validate_target <- function(target) {
  match.arg(target[1L], c("distribution", "density"))
}

.npcopula_validate_evaluation <- function(evaluation) {
  match.arg(evaluation[1L], c("grid", "sample"))
}

.npcopula_validate_neval <- function(neval) {
  if (!is.numeric(neval) || length(neval) != 1L || is.na(neval) ||
      !is.finite(neval) || neval != floor(neval) || neval < 2L)
    stop("'neval' must be a positive integer greater than one")
  as.integer(neval)
}

.npcopula_validate_n_quasi_inv <- function(n.quasi.inv) {
  if (!is.numeric(n.quasi.inv) || length(n.quasi.inv) != 1L ||
      is.na(n.quasi.inv) || !is.finite(n.quasi.inv) ||
      n.quasi.inv != floor(n.quasi.inv) || n.quasi.inv < 2L)
    stop("'n.quasi.inv' must be an integer greater than one")
  as.integer(n.quasi.inv)
}

.npcopula_validate_er_quasi_inv <- function(er.quasi.inv) {
  if (!is.numeric(er.quasi.inv) || length(er.quasi.inv) != 1L ||
      is.na(er.quasi.inv) || !is.finite(er.quasi.inv) ||
      er.quasi.inv < 0)
    stop("'er.quasi.inv' must be a non-negative finite numeric scalar")
  er.quasi.inv
}

.npcopula_validate_u <- function(u, num.var) {
  if (is.null(u))
    return(NULL)
  if (is.vector(u) && !is.list(u))
    u <- matrix(u, 1L, length(u))
  if (is.data.frame(u)) {
    if (!all(vapply(u, is.numeric, logical(1L))))
      stop("'u' must contain numeric probability values")
  } else if (!is.matrix(u)) {
    stop("'u' must be a numeric vector, matrix, or data frame")
  } else if (!is.numeric(u)) {
    stop("'u' must contain numeric probability values")
  }
  if (ncol(u) != num.var)
    stop("u and bws are incompatible")
  u.check <- as.matrix(u)
  if (anyNA(u.check))
    stop("u must not contain missing values")
  if (any(!is.finite(u.check)))
    stop("u must contain finite probability values")
  if (any(u.check > 1 | u.check < 0))
    stop("u must lie in [0,1]")
  u
}

.npcopula_make_auto_u <- function(xnames, neval) {
  out <- as.data.frame(
    replicate(length(xnames), seq(0, 1, length.out = neval), simplify = FALSE)
  )
  names(out) <- xnames
  out
}

.npcopula_grid_dim <- function(u, num.var) {
  if (is.null(u))
    return(NULL)
  rep.int(nrow(as.data.frame(u)), num.var)
}

.npcopula_progress_begin <- function(target, evaluation, total) {
  state <- .np_progress_begin(
    label = sprintf("Copula %s %s", target, evaluation),
    total = total,
    domain = "general",
    surface = "copula"
  )
  state$start_note_grace_sec <- 0
  .np_progress_show_now(state, done = if (!is.null(total)) 0L else NULL)
}

.npcopula_progress_step <- function(state, done, detail) {
  if (is.null(state))
    return(state)
  .np_progress_step_at(
    state = state,
    now = .np_progress_now(),
    done = done,
    detail = detail,
    force = TRUE
  )
}

.npcopula_progress_total <- function(density, u.provided, num.var) {
  if (!u.provided)
    return(1L + num.var)
  num.var + 2L
}

.npcopula_eval_expanded_grid <- function(bws, data, x.u, density) {
  if (!isTRUE(density))
    return(fitted(npudist(bws = bws, tdat = data, edat = x.u)))

  copula <- fitted(npudens(bws = bws, tdat = data, edat = x.u))
  for (j in seq_len(length(bws$xnames))) {
    bws.f.marginal <- npudensbw(formula(paste("~", bws$xnames[j])),
                                bws = bws$bw[j],
                                bandwidth.compute = FALSE,
                                bwtype = bws$type,
                                ckerorder = bws$ckerorder,
                                ckertype = bws$ckertype,
                                okertype = bws$okertype,
                                ukertype = bws$ukertype,
                                data = data)
    xeval <- data.frame(x.u[, j])
    names(xeval) <- bws$xnames[j]
    copula <- copula / NZD(fitted(npudens(
      bws = bws.f.marginal,
      tdat = data[, bws$xnames[j], drop = FALSE],
      edat = xeval
    )))
  }
  copula
}

.npcopula_object <- function(result,
                             bws,
                             data,
                             target,
                             evaluation,
                             u.provided,
                             u.auto,
                             grid.dim,
                             u.input = NULL,
                             u.grid = NULL,
                             neval,
                             n.quasi.inv,
                             er.quasi.inv,
                             timing = NULL) {
  d <- as.list(result)
  d$bw <- bws$bw
  d$bws <- bws
  d$xnames <- bws$xnames
  d$nobs <- nrow(result)
  d$ndim <- bws$ndim
  d$nord <- bws$nord
  d$nuno <- bws$nuno
  d$ncon <- bws$ncon
  d$pscaling <- bws$pscaling
  d$ptype <- bws$ptype
  d$pckertype <- bws$pckertype
  d$pukertype <- bws$pukertype
  d$pokertype <- bws$pokertype
  d$eval <- result
  d$copulaerr <- NULL
  d$data <- data
  d$target <- target
  d$density <- identical(target, "density")
  d$ntrain <- bws$nobs
  d$trainiseval <- identical(evaluation, "sample")
  d$u.provided <- isTRUE(u.provided)
  d$u.auto <- isTRUE(u.auto)
  d$evaluation <- evaluation
  d$grid.dim <- grid.dim
  d$u.input <- u.input
  d$u.grid <- u.grid
  d$neval <- neval
  d$n.quasi.inv <- n.quasi.inv
  d$er.quasi.inv <- er.quasi.inv
  d$timing <- timing
  class(d) <- "npcopula"
  d
}

.npcopula_marginal_bw <- function(bws, data, j) {
  dat <- data[, bws$xnames[j], drop = FALSE]
  continuous.slot <- if (!is.null(bws$icon)) match(j, bws$icon) else NA_integer_
  marginal <- list(
    bw = bws$bw[j],
    type = bws$type,
    ckerorder = bws$ckerorder,
    ckertype = bws$ckertype,
    ckerbound = bws$ckerbound,
    ckerlb = if (!is.null(bws$ckerlb) && !is.na(continuous.slot)) bws$ckerlb[continuous.slot] else NULL,
    ckerub = if (!is.null(bws$ckerub) && !is.na(continuous.slot)) bws$ckerub[continuous.slot] else NULL,
    ukertype = bws$ukertype,
    okertype = bws$okertype
  )
  .np_make_kbandwidth_unconditional(marginal, dat)
}

.npcopula_grid_eval <- function(x) {
  dat <- as.data.frame(x)
  xnames <- x$xnames
  if (length(xnames) != 2L)
    stop("plot.npcopula currently supports two-dimensional copula displays")
  grid.dim <- x$grid.dim
  if (is.null(grid.dim) || length(grid.dim) != 2L ||
      prod(grid.dim) != nrow(dat))
    stop("npcopula grid output cannot be reshaped into a two-dimensional surface")
  if (!is.null(x$u.grid)) {
    ugrid <- as.data.frame(x$u.grid)
    if (ncol(ugrid) != 2L || nrow(ugrid) != nrow(dat))
      stop("npcopula requested grid metadata is incompatible with the fitted surface")
    u1 <- sort(unique(ugrid[[1L]]))
    u2 <- sort(unique(ugrid[[2L]]))
  } else {
    u1 <- sort(unique(dat$u1))
    u2 <- sort(unique(dat$u2))
  }
  if (length(u1) != grid.dim[1L] || length(u2) != grid.dim[2L])
    stop("npcopula grid output is not rectangular")
  xgrid <- as.data.frame(dat[, xnames, drop = FALSE])
  list(
    u1 = u1,
    u2 = u2,
    xgrid = xgrid,
    z = matrix(dat$copula, nrow = length(u1), ncol = length(u2))
  )
}

.npcopula_empirical_eval <- function(x) {
  dat <- as.data.frame(x)
  if (identical(x$evaluation, "sample") &&
      all(c("u1", "u2") %in% names(dat))) {
    return(dat[, c("u1", "u2"), drop = FALSE])
  }
  data <- .npcopula_training_data(x)
  bws <- x$bws
  out <- vector("list", length(bws$xnames))
  for (j in seq_along(bws$xnames)) {
    mbw <- .npcopula_marginal_bw(bws, data, j)
    xdat <- data[, bws$xnames[j], drop = FALSE]
    out[[j]] <- .np_ksum_unconditional_eval_exact(
      xdat = xdat,
      exdat = xdat,
      bws = mbw,
      operator = "integral"
    )
  }
  out <- as.data.frame(out)
  names(out) <- paste0("u", seq_along(out))
  out
}

.npcopula_default_plot_main <- function(target.label, view) {
  switch(view,
         contour = paste(target.label, "Contour"),
         image = if (identical(target.label, "Copula")) {
           "Contour Heatmap"
         } else {
           paste(target.label, "Heatmap")
         },
         empirical = "Empirical Copula",
         target.label)
}

.npcopula_validate_zlim <- function(zlim) {
  if (is.null(zlim))
    return(NULL)
  if (!is.numeric(zlim) || length(zlim) != 2L ||
      anyNA(zlim) || any(!is.finite(zlim)) || zlim[1L] >= zlim[2L])
    stop("zlim must be a finite numeric vector of length two with zlim[1] < zlim[2]",
         call. = FALSE)
  zlim
}

.npcopula_clip_z_for_display <- function(z, zlim) {
  if (is.null(z))
    return(NULL)
  if (is.null(zlim))
    return(z)
  pmin(pmax(z, zlim[1L]), zlim[2L])
}

.npcopula_clip_z_list_for_display <- function(zlist, zlim) {
  if (is.null(zlist))
    return(NULL)
  lapply(zlist, .npcopula_clip_z_for_display, zlim = zlim)
}

.npcopula_density_companion <- function(x) {
  if (isTRUE(x$density))
    return(x)
  data <- .npcopula_training_data(x)
  f <- stats::as.formula(paste("~", paste(x$xnames, collapse = "+")))
  bws <- x$bws
  bw.args <- list(
    formula = f,
    data = data,
    bws = bws$bw,
    bandwidth.compute = FALSE,
    bwtype = bws$type,
    ckerorder = bws$ckerorder,
    ckertype = bws$ckertype,
    okertype = bws$okertype,
    ukertype = bws$ukertype
  )
  if (!is.null(bws$ckerbound))
    bw.args$ckerbound <- bws$ckerbound
  if (!is.null(bws$ckerlb))
    bw.args$ckerlb <- bws$ckerlb
  if (!is.null(bws$ckerub))
    bw.args$ckerub <- bws$ckerub
  dbw <- do.call(npudensbw, bw.args)
  npcopula.default(
    bws = dbw,
    data = data,
    u = x$u.input,
    target = "density",
    evaluation = x$evaluation,
    neval = x$neval,
    n.quasi.inv = x$n.quasi.inv,
    er.quasi.inv = x$er.quasi.inv,
    u.auto = isTRUE(x$u.auto)
  )
}

.npcopula_draw_surface_base <- function(grid,
                                        zlab,
                                        main,
                                        theta,
                                        phi,
                                        col,
                                        border,
                                        zlim,
                                        xlab,
                                        ylab,
                                        dots) {
  persp.args <- .np_plot_user_args(dots, "persp")
  z <- .npcopula_clip_z_for_display(grid$z, zlim)
  persp.col <- grDevices::adjustcolor(
    .np_plot_persp_surface_colors(z = z, col = col),
    alpha.f = 0.5
  )
  persp.call <- list(x = grid$u1, y = grid$u2, z = z,
                     theta = theta, phi = phi,
                     ticktype = "detailed",
                     xlab = xlab, ylab = ylab, zlab = zlab,
                     main = main, col = persp.col, border = border)
  if (!is.null(zlim))
    persp.call$zlim <- zlim
  do.call(graphics::persp, .np_plot_merge_user_args(persp.call, persp.args))
}

.npcopula_plot_all <- function(x,
                               xlab,
                               ylab,
                               theta,
                               phi,
                               col,
                               border,
                               zlim,
                               dots,
                               draw = TRUE) {
  if (!identical(x$evaluation, "grid"))
    stop("view='all' requires grid evaluation output", call. = FALSE)
  grid <- .npcopula_grid_eval(x)
  empirical <- .npcopula_empirical_eval(x)
  density.obj <- .npcopula_density_companion(x)
  density.grid <- .npcopula_grid_eval(density.obj)
  out <- list(
    copula = as.data.frame(x),
    empirical = empirical,
    density = as.data.frame(density.obj)
  )
  if (!isTRUE(draw))
    return(out)
  old.par <- graphics::par(no.readonly = TRUE)
  on.exit(graphics::par(old.par), add = TRUE)
  graphics::par(mfrow = c(2L, 2L))
  do.call(graphics::contour, c(list(x = grid$u1, y = grid$u2, z = grid$z,
                                    xlab = xlab, ylab = ylab,
                                    main = "Copula Contour"),
                               dots))
  .npcopula_draw_surface_base(
    grid = grid,
    zlab = "Copula",
    main = "Copula",
    theta = theta,
    phi = phi,
    col = col,
    border = border,
    zlim = if (is.null(zlim)) c(0, 1) else zlim,
    xlab = xlab,
    ylab = ylab,
    dots = dots
  )
  do.call(graphics::plot, c(list(x = empirical$u1, y = empirical$u2,
                                 xlab = xlab, ylab = ylab, cex = 0.25,
                                 main = "Empirical Copula"),
                            dots))
  .npcopula_draw_surface_base(
    grid = density.grid,
    zlab = "Copula Density",
    main = "Copula Density",
    theta = theta,
    phi = phi,
    col = col,
    border = border,
    zlim = NULL,
    xlab = xlab,
    ylab = ylab,
    dots = dots
  )
  invisible(out)
}

.npcopula_training_data <- function(x) {
  data <- x$data
  if (is.null(data))
    stop("npcopula object does not retain the training data needed for intervals; refit with npcopula()")
  as.data.frame(data)
}

.npcopula_marginal_density_product <- function(bws, data, xgrid) {
  out <- rep.int(1.0, nrow(xgrid))
  for (j in seq_along(bws$xnames)) {
    mbw <- .npcopula_marginal_bw(bws, data, j)
    xeval <- xgrid[, bws$xnames[j], drop = FALSE]
    out <- out * .np_ksum_unconditional_eval_exact(
      xdat = data[, bws$xnames[j], drop = FALSE],
      exdat = xeval,
      bws = mbw,
      operator = "normal"
    )
  }
  NZD(out)
}

.npcopula_asymptotic_se <- function(x, data, xgrid) {
  bws <- x$bws
  target <- x$target
  density <- identical(target, "density")
  if (density) {
    joint <- npudens(tdat = data, edat = xgrid, bws = bws)
    return(se(joint) / .npcopula_marginal_density_product(bws, data, xgrid))
  }
  joint <- npudist(tdat = data, edat = xgrid, bws = bws)
  se(joint)
}

.npcopula_eval_xgrid <- function(x) {
  dat <- as.data.frame(x)
  xnames <- x$xnames
  if (length(xnames) && all(xnames %in% names(dat)))
    return(as.data.frame(dat[, xnames, drop = FALSE]))
  data <- .npcopula_training_data(x)
  if (nrow(data) != length(x$copula))
    stop("npcopula object does not retain evaluation coordinates needed for standard errors")
  as.data.frame(data[, xnames, drop = FALSE])
}

.npcopula_boot_counts <- function(n, B, method, blocklen) {
  if (identical(method, "inid"))
    return(.np_inid_counts_matrix(n = n, B = B))
  drawer <- .np_block_counts_drawer(
    n = n,
    B = B,
    blocklen = blocklen,
    sim = method
  )
  .np_inid_counts_matrix(n = n, B = B, counts = drawer(1L, B))
}

.npcopula_boot_eval_weighted <- function(xdat, exdat, bws, operator, counts.col) {
  active <- .np_active_boot_sample(xdat = xdat, counts.col = counts.col)
  .np_ksum_unconditional_eval_exact(
    xdat = active$xdat,
    exdat = exdat,
    bws = bws,
    operator = operator,
    weights = active$weights,
    n.total = active$n.total
  )
}

.npcopula_bootstrap_values <- function(x,
                                       data,
                                       xgrid,
                                       B,
                                       method,
                                       blocklen) {
  bws <- x$bws
  target <- x$target
  density <- identical(target, "density")
  method <- match.arg(method, c("inid", "fixed", "geom"))
  B <- as.integer(B)
  if (B < 1L)
    stop("B must be a positive integer")
  if (!identical(method, "inid") &&
      (is.null(blocklen) || length(blocklen) != 1L || is.na(blocklen)))
    blocklen <- max(1L, floor(nrow(data)^(1/3)))
  marginal.bws <- if (density) {
    lapply(seq_along(bws$xnames), function(j) {
      .npcopula_marginal_bw(bws, data, j)
    })
  } else {
    NULL
  }

  counts <- .npcopula_boot_counts(
    n = nrow(data),
    B = B,
    method = method,
    blocklen = blocklen
  )
  tmat <- matrix(NA_real_, nrow = B, ncol = nrow(xgrid))
  progress <- .np_plot_bootstrap_progress_begin(
    total = B,
    label = if (identical(method, "inid")) "Plot bootstrap inid" else "Plot bootstrap block"
  )
  on.exit(.np_plot_progress_end(progress), add = TRUE)

  start <- 1L
  chunk.size <- .np_inid_chunk_size(n = nrow(data), B = B, progress_cap = TRUE)
  chunk.controller <- .np_plot_progress_chunk_controller(chunk.size = chunk.size, progress = progress)
  while (start <= B) {
    stopi <- min(B, start + chunk.controller$chunk.size - 1L)
    chunk.started <- .np_progress_now()
    for (bb in start:stopi) {
      joint <- .npcopula_boot_eval_weighted(
        xdat = data,
        exdat = xgrid,
        bws = bws,
        operator = if (density) "normal" else "integral",
        counts.col = counts[, bb]
      )
      if (density) {
        denom <- rep.int(1.0, nrow(xgrid))
        for (j in seq_along(bws$xnames)) {
          denom <- denom * .npcopula_boot_eval_weighted(
            xdat = data[, bws$xnames[j], drop = FALSE],
            exdat = xgrid[, bws$xnames[j], drop = FALSE],
            bws = marginal.bws[[j]],
            operator = "normal",
            counts.col = counts[, bb]
          )
        }
        joint <- joint / NZD(denom)
      }
      tmat[bb, ] <- joint
    }
    progress <- .np_plot_progress_tick(state = progress, done = stopi)
    chunk.controller <- .np_plot_progress_chunk_observe(
      controller = chunk.controller,
      bsz = stopi - start + 1L,
      elapsed.sec = .np_progress_now() - chunk.started
    )
    start <- stopi + 1L
  }

  list(t = tmat, t0 = x$copula)
}

.npcopula_interval_payload <- function(x,
                                       plot.errors.method,
                                       plot.errors.alpha,
                                       plot.errors.type,
                                       plot.errors.center,
                                       plot.errors.boot.method,
                                       plot.errors.boot.num,
                                       plot.errors.boot.blocklen) {
  if (identical(plot.errors.method, "none"))
    return(NULL)
  if (!identical(x$evaluation, "grid"))
    stop("npcopula intervals are available only for grid evaluation output")

  data <- .npcopula_training_data(x)
  grid <- .npcopula_grid_eval(x)
  se <- if (identical(plot.errors.method, "asymptotic")) {
    .npcopula_asymptotic_se(x, data = data, xgrid = grid$xgrid)
  } else {
    rep(NA_real_, nrow(grid$xgrid))
  }
  boot.raw <- if (identical(plot.errors.method, "bootstrap")) {
    boot.out <- .npcopula_bootstrap_values(
      x = x,
      data = data,
      xgrid = grid$xgrid,
      B = plot.errors.boot.num,
      method = plot.errors.boot.method,
      blocklen = plot.errors.boot.blocklen
    )
    if (identical(plot.errors.type, "pmzsd")) {
      boot.err <- matrix(NA_real_, nrow = nrow(grid$xgrid), ncol = 3L)
      boot.sd <- .np_plot_bootstrap_col_sds(boot.out$t)
      boot.err[, 1:2] <- qnorm(plot.errors.alpha / 2, lower.tail = FALSE) * boot.sd
      boot.all.err <- NULL
    } else {
      interval.summary <- .np_plot_bootstrap_interval_summary(
        boot.t = boot.out$t,
        t0 = boot.out$t0,
        alpha = plot.errors.alpha,
        band.type = plot.errors.type
      )
      boot.err <- matrix(NA_real_, nrow = nrow(grid$xgrid), ncol = 3L)
      boot.err[, 1:2] <- interval.summary$err
      boot.all.err <- interval.summary$all.err
    }
    if (identical(plot.errors.center, "bias-corrected"))
      boot.err[, 3L] <- 2 * boot.out$t0 - colMeans(boot.out$t)
    list(boot.err = boot.err, boot.all.err = boot.all.err, bxp = list())
  } else {
    NULL
  }
  .np_plot_interval_payload(
    estimate = x$copula,
    se = se,
    plot.errors.method = plot.errors.method,
    plot.errors.alpha = plot.errors.alpha,
    plot.errors.type = plot.errors.type,
    plot.errors.center = plot.errors.center,
    bootstrap_raw = boot.raw
  )
}

.npcopula_add_interval_columns <- function(x, payload) {
  x <- as.data.frame(x)
  if (is.null(payload))
    return(x)
  x$center <- payload$center
  x$lower <- payload$center - payload$err[, 1L]
  x$upper <- payload$center + payload$err[, 2L]
  if (!is.null(payload$all.err)) {
    for (nm in names(payload$all.err)) {
      x[[paste0(nm, ".lower")]] <- payload$center - payload$all.err[[nm]][, 1L]
      x[[paste0(nm, ".upper")]] <- payload$center + payload$all.err[[nm]][, 2L]
    }
  }
  x
}

print.npcopula <- function(x, ...) {
  target <- x$target
  evaluation <- x$evaluation
  ntrain <- x$ntrain
  xnames <- x$xnames
  grid.dim <- x$grid.dim

  cat("\nKernel Copula ", if (identical(target, "density")) "Density" else "Distribution",
      ": ", ntrain, " training points, in ", length(xnames),
      " variable(s)\n", sep = "")
  cat("Evaluation: ", evaluation, sep = "")
  if (!is.null(grid.dim))
    cat(" (grid ", paste(grid.dim, collapse = " x "), ")", sep = "")
  cat("\n\n")
  print(utils::head(as.data.frame(x), ...))
  invisible(x)
}

summary.npcopula <- function(object, ...) {
  print(object)
  cat("\nBandwidth summary:\n")
  summary(object$bws)
  cat("\nCopula value summary:\n")
  print(summary(object$copula))
  invisible(object)
}

fitted.npcopula <- function(object, ...) {
  object$copula
}

.npcopula_predict_newdata_to_u <- function(object, newdata) {
  if (is.null(newdata))
    return(NULL)
  if (is.vector(newdata) && !is.list(newdata))
    return(matrix(newdata, nrow = 1L))

  nd <- as.data.frame(newdata)
  xnames <- object$xnames
  unames <- paste0("u", seq_along(xnames))
  if (length(xnames) && all(xnames %in% names(nd)))
    return(nd[, xnames, drop = FALSE])
  if (length(unames) && all(unames %in% names(nd))) {
    out <- nd[, unames, drop = FALSE]
    names(out) <- xnames
    return(out)
  }
  nd
}

predict.npcopula <- function(object,
                             newdata = NULL,
                             u = NULL,
                             se.fit = FALSE,
                             output = c("vector", "object", "data"),
                             ...) {
  se.fit <- npValidateScalarLogical(se.fit, "se.fit")
  output <- match.arg(output)
  dots <- list(...)

  if (is.null(u) && !is.null(newdata)) {
    u <- .npcopula_predict_newdata_to_u(object, newdata)
  } else if (!is.null(u)) {
    u <- .npcopula_predict_newdata_to_u(object, u)
  }

  if (is.null(u) && !length(dots)) {
    ev <- object
  } else {
    data <- dots$data
    dots$data <- NULL
    if (is.null(data))
      data <- object$data
    if (is.null(data))
      stop("npcopula object does not retain the training data needed for prediction; refit with npcopula()")
    args <- c(list(bws = object$bws, data = data),
              if (is.null(u)) list() else list(u = u),
              dots)
    ev <- do.call(npcopula, args)
  }

  if (identical(output, "object"))
    return(ev)
  if (identical(output, "data"))
    return(as.data.frame(ev))
  if (se.fit)
    return(list(fit = fitted(ev), se.fit = se(ev), df = ev$ntrain))
  fitted(ev)
}

se.npcopula <- function(x) {
  if (!is.null(x$copulaerr) && length(x$copulaerr) == length(x$copula))
    return(x$copulaerr)
  .npcopula_asymptotic_se(
    x = x,
    data = .npcopula_training_data(x),
    xgrid = .npcopula_eval_xgrid(x)
  )
}

as.data.frame.npcopula <- function(x, row.names = NULL, optional = FALSE, ...) {
  out <- x$eval
  if (is.null(row.names)) {
    row.names <- .set_row_names(nrow(out))
  }
  attr(out, "row.names") <- row.names
  out
}

plot.npcopula <- function(x,
                          perspective = TRUE,
                          view = c("rotate", "fixed", "surface", "contour", "image",
                                   "empirical", "all"),
                          renderer = c("base", "rgl"),
                          errors = c("none", "bootstrap", "asymptotic"),
                          band = c("pointwise", "pmzsd", "bonferroni",
                                   "simultaneous", "all"),
                          alpha = 0.05,
                          bootstrap = c("inid", "fixed", "geom"),
                          B = 1999,
                          center = c("estimate", "bias-corrected"),
                          boot_control = np_boot_control(),
                          output = c("plot", "data", "plot-data", "both"),
                          legend = TRUE,
                          theta = 0.0,
                          phi = 20.0,
                          xlab = "u1",
                          ylab = "u2",
                          zlab = NULL,
                          main = NULL,
                          col = NULL,
                          border = "black",
                          zlim = NULL,
                          ...) {
  bootstrap.supplied <- !missing(bootstrap) || !missing(B) || !missing(center)
  interval.supplied <- !missing(band) || !missing(alpha)
  view <- match.arg(view)
  surface.view <- view %in% c("rotate", "fixed", "surface")
  rotate.surface <- identical(view, "rotate")
  renderer <- .np_plot_match_renderer(renderer)
  errors <- match.arg(errors)
  band <- match.arg(band)
  bootstrap <- match.arg(bootstrap)
  center <- match.arg(center)
  output <- match.arg(output)
  if (identical(output, "both"))
    output <- "plot-data"
  if (!is.numeric(alpha) || length(alpha) != 1L ||
      is.na(alpha) || alpha <= 0 || alpha >= 0.5)
    stop("alpha must lie in (0, 0.5)", call. = FALSE)
  if (!is.numeric(B) || length(B) != 1L || is.na(B) || B < 1L)
    stop("B must be a positive numeric scalar", call. = FALSE)
  zlim <- .npcopula_validate_zlim(zlim)
  if (!inherits(boot_control, "np_boot_control"))
    stop("boot_control must be created by np_boot_control()", call. = FALSE)
  if (!identical(errors, "bootstrap") && bootstrap.supplied)
    stop("bootstrap controls require errors = \"bootstrap\"", call. = FALSE)
  if (identical(errors, "none") && interval.supplied)
    stop("band and alpha require errors != \"none\"", call. = FALSE)
  if (identical(errors, "bootstrap"))
    .np_plot_reject_wild_unsupervised(bootstrap, "copula estimators")
  dots <- list(...)
  target <- x$target
  target.label <- if (identical(target, "density")) "Copula Density" else "Copula"
  main.supplied <- !missing(main) && !is.null(main)
  if (is.null(zlab))
    zlab <- target.label
  if (is.null(main))
    main <- .npcopula_default_plot_main(target.label, view)

  xnames <- x$xnames
  if (length(xnames) != 2L)
    stop("plot.npcopula currently supports two-dimensional copula displays")

  if (identical(view, "all")) {
    if (isTRUE(x$density))
      stop("view='all' requires a copula distribution object",
           call. = FALSE)
    if (!identical(errors, "none"))
      stop("view='all' does not currently support interval overlays",
           call. = FALSE)
    if (identical(renderer, "rgl"))
      stop("view='all' is currently supported only with renderer='base'",
           call. = FALSE)
    all.data <- .npcopula_plot_all(
      x = x,
      xlab = xlab,
      ylab = ylab,
      theta = theta,
      phi = phi,
      col = col,
      border = border,
      zlim = zlim,
      dots = dots,
      draw = !identical(output, "data")
    )
    if (identical(output, "data") || identical(output, "plot-data"))
      return(all.data)
    return(invisible(x))
  }

  if (identical(view, "empirical")) {
    if (!identical(errors, "none"))
      stop("view='empirical' does not support interval overlays",
           call. = FALSE)
    if (identical(renderer, "rgl"))
      stop("renderer='rgl' is supported only for grid surface displays in plot.npcopula",
           call. = FALSE)
    empirical <- .npcopula_empirical_eval(x)
    if (identical(output, "data"))
      return(empirical)
    do.call(graphics::plot, c(list(x = empirical$u1, y = empirical$u2,
                                   xlab = xlab, ylab = ylab, cex = 0.25,
                                   main = main),
                              dots))
    if (identical(output, "plot-data"))
      return(empirical)
    return(invisible(x))
  }

  evaluation <- x$evaluation
  if (identical(evaluation, "sample")) {
    if (!identical(errors, "none"))
      stop("npcopula intervals are available only for grid evaluation output",
           call. = FALSE)
    if (identical(renderer, "rgl"))
      stop("renderer='rgl' is supported only for grid surface displays in plot.npcopula",
           call. = FALSE)
    if (identical(output, "data"))
      return(as.data.frame(x))
    do.call(graphics::plot, c(list(x = x$u1, y = x$u2,
                                   xlab = xlab, ylab = ylab, main = main),
                              dots))
    if (identical(output, "plot-data"))
      return(as.data.frame(x))
    return(invisible(x))
  }

  if (!identical(errors, "none") &&
      !(isTRUE(perspective) && surface.view) &&
      !identical(output, "data"))
    stop("npcopula interval plotting requires a surface view and perspective=TRUE",
         call. = FALSE)

  grid <- .npcopula_grid_eval(x)
  u1 <- grid$u1
  u2 <- grid$u2
  z <- grid$z
  z.display <- .npcopula_clip_z_for_display(z, zlim)
  payload <- .npcopula_interval_payload(
    x = x,
    plot.errors.method = errors,
    plot.errors.alpha = alpha,
    plot.errors.type = band,
    plot.errors.center = center,
    plot.errors.boot.method = bootstrap,
    plot.errors.boot.num = as.integer(B),
    plot.errors.boot.blocklen = boot_control$blocklen
  )
  plot.data <- .npcopula_add_interval_columns(x, payload)
  if (identical(output, "data"))
    return(plot.data)

  lerr <- herr <- lerr.all <- herr.all <- NULL
  if (!is.null(payload)) {
    lerr <- matrix(payload$center - payload$err[, 1L],
                   nrow = length(u1), ncol = length(u2))
    herr <- matrix(payload$center + payload$err[, 2L],
                   nrow = length(u1), ncol = length(u2))
    if (identical(band, "all") && !is.null(payload$all.err)) {
      lerr.all <- lapply(payload$all.err, function(te)
        matrix(payload$center - te[, 1L], nrow = length(u1), ncol = length(u2)))
      herr.all <- lapply(payload$all.err, function(te)
        matrix(payload$center + te[, 2L], nrow = length(u1), ncol = length(u2)))
    }
  }
  if (is.null(zlim)) {
    zlim.values <- c(z, lerr, herr, unlist(lerr.all, use.names = FALSE),
                     unlist(herr.all, use.names = FALSE))
    zlim <- range(zlim.values, finite = TRUE)
    z.display <- z
  } else {
    lerr <- .npcopula_clip_z_for_display(lerr, zlim)
    herr <- .npcopula_clip_z_for_display(herr, zlim)
    lerr.all <- .npcopula_clip_z_list_for_display(lerr.all, zlim)
    herr.all <- .npcopula_clip_z_list_for_display(herr.all, zlim)
  }

  if (isTRUE(perspective) && surface.view) {
    renderer <- .np_plot_validate_renderer_request(
      renderer = renderer,
      route = "plot.npcopula",
      perspective = perspective,
      supported.route = TRUE,
      view = if (identical(renderer, "rgl")) {
        "fixed"
      } else if (rotate.surface) {
        "rotate"
      } else {
        "fixed"
      }
    )
    if (identical(renderer, "rgl")) {
      rgl.view <- .np_plot_rgl_view_angles(theta = theta, phi = phi)
      rgl.out <- .np_plot_render_surface_rgl(
        x = u1,
        y = u2,
        z = z.display,
        xlab = xlab,
        ylab = ylab,
        zlab = zlab,
        main = main,
        theta = rgl.view$theta,
        phi = rgl.view$phi,
        col = col,
        border = border,
        zlim = zlim,
        par3d.args = .np_plot_collect_rgl_args(dots, "rgl.par3d", "rgl.par3d."),
        view3d.args = .np_plot_collect_rgl_args(dots, "rgl.view3d", "rgl.view3d."),
        persp3d.args = .np_plot_collect_rgl_args(dots, "rgl.persp3d", "rgl.persp3d."),
        grid3d.args = .np_plot_collect_rgl_args(dots, "rgl.grid3d", "rgl.grid3d."),
        widget.args = .np_plot_collect_rgl_args(dots, "rgl.widget", "rgl.widget."),
        draw.extras = function() {
          if (!is.null(payload)) {
            .np_plot_error_surfaces_rgl(
              x = u1,
              y = u2,
              plot.errors.type = band,
              lerr = lerr,
              herr = herr,
              lerr.all = lerr.all,
              herr.all = herr.all,
              surface3d.args = .np_plot_collect_rgl_args(dots, "rgl.persp3d", "rgl.persp3d."),
              legend3d.args = .np_plot_merge_rgl_legend_control(
                .np_plot_collect_rgl_args(dots, "rgl.legend3d", "rgl.legend3d."),
                legend = legend
              )
            )
          }
        }
      )
      return(.np_plot_rgl_finalize(
        rgl.out = rgl.out,
        plot.behavior = output,
        plot.data = plot.data
      ))
    }
    persp.args <- .np_plot_user_args(dots, "persp")
    persp.col <- grDevices::adjustcolor(
      .np_plot_persp_surface_colors(z = z.display, col = col),
      alpha.f = 0.5
    )
    rotate.defaults <- .np_plot_rotate_defaults()
    dtheta <- rotate.defaults$dtheta
    frame.theta <- if (rotate.surface) {
      (0:((360 %/% dtheta - 1L))) * dtheta + theta
    } else {
      theta
    }
    rotation.progress <- .np_plot_rotation_progress_begin(length(frame.theta))
    on.exit(.np_plot_rotation_progress_end(rotation.progress), add = TRUE)

    for (frame.idx in seq_along(frame.theta)) {
      i <- frame.theta[[frame.idx]]
      persp.call <- list(x = u1, y = u2, z = z.display,
                         theta = i, phi = phi,
                         ticktype = "detailed",
                         xlab = xlab, ylab = ylab, zlab = zlab,
                         main = main, col = persp.col, border = border)
      if (!is.null(zlim))
        persp.call$zlim <- zlim
      persp.mat <- do.call(graphics::persp, .np_plot_merge_user_args(persp.call, persp.args))
      if (!is.null(payload)) {
        .np_plot_draw_error_wireframes_persp(
          x = u1,
          y = u2,
          persp.mat = persp.mat,
          plot.errors.type = band,
          lerr = lerr,
          herr = herr,
          lerr.all = lerr.all,
          herr.all = herr.all,
          border = "grey40",
          lwd = .np_plot_scalar_default(dots$lwd, par()$lwd)
        )
        if (identical(band, "all") && !is.null(lerr.all) && !is.null(herr.all) &&
            isTRUE(legend)) {
          .np_plot_draw_all_band_legend(legend = TRUE, x = "topright")
        }
      }
      rotation.progress <- .np_plot_rotation_progress_tick(rotation.progress, done = frame.idx)
      Sys.sleep(if (rotate.surface) rotate.defaults$sleep else 0.5)
    }
  } else if (identical(view, "contour")) {
    if (identical(renderer, "rgl"))
      stop("renderer='rgl' is supported only for surface views in plot.npcopula",
           call. = FALSE)
    do.call(graphics::contour, c(list(x = u1, y = u2, z = z,
                                      xlab = xlab, ylab = ylab, main = main),
                                 dots))
  } else {
    if (identical(renderer, "rgl"))
      stop("renderer='rgl' is supported only for surface views in plot.npcopula",
           call. = FALSE)
    image.col <- if (is.null(col)) {
      grDevices::hcl.colors(100L, palette = "viridis")
    } else {
      col
    }
    do.call(graphics::image, c(list(x = u1, y = u2, z = z,
                                    xlab = xlab, ylab = ylab, main = main,
                                    col = image.col),
                               dots))
  }
  if (identical(output, "plot-data"))
    return(plot.data)
  invisible(x)
}

npcopula.formula <- function(bws,
                             data = NULL,
                             u = NULL,
                             target = c("distribution", "density"),
                             evaluation = c("grid", "sample"),
                             neval = 30,
                             n.quasi.inv = 1000,
                             er.quasi.inv = 1,
                             ...) {
  target <- .npcopula_validate_target(target)
  evaluation <- .npcopula_validate_evaluation(evaluation)
  neval <- .npcopula_validate_neval(neval)

  mf <- stats::model.frame(bws, data = data)
  dat <- mf[, attr(attr(mf, "terms"), "term.labels"), drop = FALSE]
  num.var <- ncol(dat)

  u.auto <- FALSE
  if (is.null(u) && identical(evaluation, "grid")) {
    if (num.var != 2L)
      stop("automatic copula probability grids are supported only for two variables; supply 'u' or use evaluation='sample'")
    u <- .npcopula_make_auto_u(names(dat), neval)
    u.auto <- TRUE
  }

  bw.fun <- if (identical(target, "density")) npudensbw else npudistbw
  bw.args <- c(
    list(formula = bws),
    if (is.null(data)) list() else list(data = data),
    list(...)
  )
  bw <- .np_progress_select_bandwidth_enhanced(
    if (identical(target, "density")) "Selecting copula density bandwidth" else "Selecting copula distribution bandwidth",
    do.call(bw.fun, bw.args)
  )

  npcopula.default(
    bws = bw,
    data = dat,
    u = u,
    target = target,
    evaluation = if (is.null(u)) "sample" else "grid",
    neval = neval,
    n.quasi.inv = n.quasi.inv,
    er.quasi.inv = er.quasi.inv,
    u.auto = u.auto
  )
}

npcopula.default <- function(bws,
                             data,
                             u = NULL,
                             target = NULL,
                             evaluation = c("sample", "grid"),
                             neval = 30,
                             n.quasi.inv = 1000,
                             er.quasi.inv = 1,
                             ...) {
  dots <- list(...)
  u.auto <- isTRUE(dots$u.auto)
  dots$u.auto <- NULL
  formula.from.target <- !missing(target) && inherits(target, "formula")
  formula.from.u <- !missing(u) && inherits(u, "formula")
  formula.from.evaluation <- !missing(evaluation) && inherits(evaluation, "formula")
  formula.arg <- if (formula.from.target) {
    target
  } else if (formula.from.u) {
    u
  } else if (formula.from.evaluation) {
    evaluation
  } else if (length(dots) && inherits(dots[[1L]], "formula")) {
    dots[[1L]]
  } else {
    NULL
  }
  if (!is.null(formula.arg) &&
      !isa(bws, "dbandwidth") && !isa(bws, "bandwidth")) {
    if (length(dots) && inherits(dots[[1L]], "formula"))
      dots[[1L]] <- NULL
    target.formula <- .npcopula_validate_target(
      if (!missing(target) && !is.null(target) && !formula.from.target)
        target
      else
        c("distribution", "density")
    )
    evaluation.formula <- .npcopula_validate_evaluation(
      if (!missing(evaluation) && !formula.from.evaluation)
        evaluation
      else
        c("grid", "sample")
    )
    neval.formula <- .npcopula_validate_neval(if (!missing(neval)) neval else 30)
    mf <- if (missing(data)) {
      stats::model.frame(formula.arg)
    } else {
      stats::model.frame(formula.arg, data = data)
    }
    dat <- mf[, attr(attr(mf, "terms"), "term.labels"), drop = FALSE]
    u.formula <- if (formula.from.u || missing(u)) NULL else u
    auto.grid <- FALSE
    if (is.null(u.formula) && identical(evaluation.formula, "grid")) {
      if (ncol(dat) != 2L)
        stop("automatic copula probability grids are supported only for two variables; supply 'u' or use evaluation='sample'")
      u.formula <- .npcopula_make_auto_u(names(dat), neval.formula)
      auto.grid <- TRUE
    }
    bw.fun <- if (identical(target.formula, "density")) npudensbw else npudistbw
    bw.args <- c(
      list(formula = formula.arg),
      if (missing(data)) list() else list(data = data),
      list(bws = bws),
      dots
    )
    bw <- .np_progress_select_bandwidth_enhanced(
      if (identical(target.formula, "density")) "Selecting copula density bandwidth" else "Selecting copula distribution bandwidth",
      do.call(bw.fun, bw.args)
    )
    args <- c(
      list(bws = bw,
           data = dat,
           u = u.formula,
           target = target.formula,
           evaluation = if (is.null(u.formula)) "sample" else "grid",
           neval = neval.formula,
           n.quasi.inv = n.quasi.inv,
           er.quasi.inv = er.quasi.inv,
           u.auto = auto.grid)
    )
    return(do.call(npcopula.default, args))
  }

  evaluation <- .npcopula_validate_evaluation(evaluation)
  neval <- .npcopula_validate_neval(neval)
  start.time <- proc.time()[3]

  if(missing(data)) stop("You must provide a data frame")
  if(!is.data.frame(data)) stop("Object `data' must be a data frame")
  if(missing(bws)) stop("You must provide a bandwidth object")
  if(!isa(bws,"dbandwidth") && !isa(bws,"bandwidth"))
    stop("you must provide a density (npudensbw) or distribution (npudistbw) object")

  density <- isa(bws, "bandwidth")
  inferred.target <- if (density) "density" else "distribution"
  if (!is.null(target)) {
    target <- .npcopula_validate_target(target)
    if (!identical(target, inferred.target))
      stop("'target' conflicts with the supplied bandwidth object")
  } else {
    target <- inferred.target
  }

  result <- .npcopula_eval(
    bws = bws,
    data = data,
    u = u,
    target = target,
    evaluation = evaluation,
    neval = neval,
    n.quasi.inv = n.quasi.inv,
    er.quasi.inv = er.quasi.inv,
    u.auto = u.auto
  )
  result$timing <- proc.time()[3] - start.time
  result
}

.npcopula_eval <- function(bws,
                           data,
                           u = NULL,
                           target,
                           evaluation,
                           neval,
                           n.quasi.inv,
                           er.quasi.inv,
                           u.auto = FALSE) {
  density <- identical(target, "density")
  num.var <- length(bws$xnames)
  u <- .npcopula_validate_u(u, num.var)
  n.quasi.inv <- .npcopula_validate_n_quasi_inv(n.quasi.inv)
  er.quasi.inv <- .npcopula_validate_er_quasi_inv(er.quasi.inv)
  if(any(is.na(data))) stop("NA values present in data - recompute bw object with na.omit on data")
  if(bws$nuno>0) stop("unordered factors not suitable for copula estimation")

  u.provided <- !is.null(u)
  grid.dim <- .npcopula_grid_dim(u, num.var)
  u.input <- if (u.provided) as.data.frame(u) else NULL
  u.requested <- u

  progress.total <- .npcopula_progress_total(density = density,
                                             u.provided = u.provided,
                                             num.var = num.var)
  progress <- .npcopula_progress_begin(target = target,
                                       evaluation = if (u.provided) "grid" else "sample",
                                       total = progress.total)
  on.exit(.np_progress_end(progress), add = TRUE)
  stage <- 0L

  if(is.null(u)) {
    stage <- stage + 1L
    progress <- .npcopula_progress_step(
      progress, stage,
      if(!density) "joint distribution at sample realizations" else "joint density at sample realizations"
    )
    if(!density) {
      copula <- fitted(npudist(bws=bws,data=data))
    } else {
      copula <- fitted(npudens(bws=bws,data=data))
    }

    u <- matrix(NA,bws$nobs,num.var)
    for (j in seq_len(num.var)) {
      stage <- stage + 1L
      progress <- .npcopula_progress_step(
        progress, stage,
        sprintf("marginal %s at sample realizations", bws$xnames[j])
      )
      bws.F.marginal <- npudistbw(formula(paste("~",bws$xnames[j])),
                         bws=bws$bw[j],
                         bandwidth.compute=FALSE,
                         bwtype=bws$type,
                         ckerorder=bws$ckerorder,
                         ckertype=bws$ckertype,
                         okertype=bws$okertype,
                         data=data)

      u[,j] <- fitted(npudist(bws=bws.F.marginal,data=data))
      if(density) {
        bws.f.marginal <- npudensbw(formula(paste("~",bws$xnames[j])),
                           bws=bws$bw[j],
                           bandwidth.compute=FALSE,
                           bwtype=bws$type,
                           ckerorder=bws$ckerorder,
                           ckertype=bws$ckertype,
                           okertype=bws$okertype,
                           ukertype=bws$ukertype,
                           data=data)
        copula <- copula/NZD(fitted(npudens(bws=bws.f.marginal,data=data)))

      }
    }
  } else {
    n.u <- nrow(u)
    x.u <- data.frame(matrix(NA,n.u,num.var))
    names(x.u) <- bws$xnames
    for (j in seq_len(num.var)) {
      stage <- stage + 1L
      progress <- .npcopula_progress_step(
        progress, stage,
        sprintf("quasi-inverse marginal %s", bws$xnames[j])
      )
      x.marginal <- data[[bws$xnames[j]]]
      quantile.seq <- seq(0,1,length=round(n.quasi.inv/2))
      if(is.numeric(x.marginal)) {
        x.er <- extendrange(x.marginal,f=er.quasi.inv)
        x.q <- quantile(x.marginal,quantile.seq)
        x.eval <- sort(c(seq(x.er[1],x.er[2],length=round(n.quasi.inv/2)),x.q))
      } else {
        x.u[,j] <- ordered(x.u[,j],levels=levels(x.marginal))
        x.q <- sapply(seq_len(round(n.quasi.inv/2)), function(i) { uocquantile(x.marginal, quantile.seq[i]) })
        x.eval <- sort(ordered(c(as.character(x.q),as.character(x.q)),levels=levels(x.marginal)))
      }
      F <- fitted(npudist(tdat=x.marginal,
                          edat=x.eval,
                          bws=bws$bw[j],
                          bwtype=bws$type,
                          ckerorder=bws$ckerorder,
                          ckertype=bws$ckertype,
                          okertype=bws$okertype,
                          ukertype=bws$ukertype,data=data))
      for (i in seq_len(n.u)) {
        u[u[,j]<min(F),j] <- min(F)
        u[u[,j]>max(F),j] <- max(F)
        x.u[i,j] <-  min(x.eval[F>=u[i,j]])
      }
    }

    stage <- stage + 1L
    progress <- .npcopula_progress_step(progress, stage, "expand u grid")
    x.u <- expand.grid(data.frame(x.u))
    for (k in seq_len(ncol(x.u))) {
      if(is.ordered(data[,k])) x.u[,k] <- ordered(x.u[,k],levels=levels(data[,k]))
    }
    if(!density) {
      stage <- stage + 1L
      detail <- "joint distribution on expanded grid"
      progress <- .npcopula_progress_step(progress, stage, detail)
      copula <- .npcopula_eval_expanded_grid(
        bws = bws,
        data = data,
        x.u = x.u,
        density = density
      )
    } else {
      stage <- stage + 1L
      detail <- "copula density on expanded grid"
      progress <- .npcopula_progress_step(progress, stage, detail)
      copula <- .npcopula_eval_expanded_grid(
        bws = bws,
        data = data,
        x.u = x.u,
        density = density
      )
    }
  }

  if(!u.provided) {
    u <- data.frame(u)
    names(u) <- paste("u", seq_len(num.var), sep = "")
    out <- data.frame(copula,u)
  } else {
    u.grid <- expand.grid(data.frame(u.requested))
    names(u.grid) <- paste("u", seq_len(num.var), sep = "")
    u <- expand.grid(data.frame(u))
    names(u) <- paste("u", seq_len(num.var), sep = "")
    out <- data.frame(copula,u,x.u)
  }

  .npcopula_object(
    result = out,
    bws = bws,
    data = data,
    target = target,
    evaluation = if (u.provided) "grid" else "sample",
    u.provided = u.provided,
    u.auto = u.auto,
    grid.dim = grid.dim,
    u.input = u.input,
    u.grid = if (u.provided) u.grid else NULL,
    neval = neval,
    n.quasi.inv = n.quasi.inv,
    er.quasi.inv = er.quasi.inv
  )
}

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np documentation built on May 16, 2026, 1:07 a.m.