API for pagoda2
Single Cell Analysis and Differential Expression
| Global functions | |
|---|---|
| .onUnload | Man page Source code |
| Mode | Man page Source code |
| Pagoda2 | Man page |
| WriteListToBinary | Source code |
| areColors | Man page Source code |
| armaCor | Man page Source code |
| arma_mat_cor | Source code |
| avg_rank | Source code |
| basicP2proc | Man page Source code |
| basicP2web | Man page Source code |
| bh.adjust | Source code |
| buildWijMatrix | Man page Source code |
| calcMulticlassified | Man page Source code |
| calculate.go.enrichment | Source code |
| cellsPerSelectionGroup | Man page Source code |
| checkBits | Source code |
| checkOpenMP | Source code |
| cldend2array | Man page Source code |
| closestNPointsToSegments | Source code |
| closestNSegmentsToPoints | Source code |
| col2hex | Source code |
| colMeanVarS | Source code |
| colSumByFac | Source code |
| collapse.aspect.clusters | Man page Source code |
| compareClusterings | Man page Source code |
| diffExprOnP2FromWebSelection | Man page Source code |
| diffExprOnP2FromWebSelectionOneGroup | Man page Source code |
| embedKnnGraphUmap | Source code |
| extendedP2proc | Man page Source code |
| factorFromP2Selection | Man page |
| factorListToMetadata | Man page Source code |
| factorToP2selection | Man page Source code |
| gene.vs.molecule.cell.filter | Man page Source code |
| generateClassificationAnnotation | Man page Source code |
| get.control.geneset | Man page Source code |
| get.de.geneset | Man page Source code |
| getCellsInSelections | Man page Source code |
| getClusterLabelsFromSelection | Man page Source code |
| getColorsFromP2Selection | Man page Source code |
| getIntExtNamesP2Selection | Man page Source code |
| hierDiffToGenesets | Man page Source code |
| inplaceColMult | Source code |
| inplaceWinsorizeSparseCols | Source code |
| make.p2.app | Man page Source code |
| matWCorr | Source code |
| minMaxScale | Man page Source code |
| my.heatmap2 | Source code |
| namedNames | Man page Source code |
| nearbyPointsGreedyCluster | Source code |
| non0LogColLmS | Source code |
| orderColumnRows | Source code |
| p2.generate.dr.go | Man page Source code |
| p2.generate.dr.go.web | Man page Source code |
| p2.generate.go | Man page Source code |
| p2.generate.go.web | Man page |
| p2.generate.go.web.fromGOEnv | Man page Source code |
| p2.generate.human.go | Man page Source code |
| p2.generate.human.go.web | Man page Source code |
| p2.generate.mouse.go | Man page Source code |
| p2.generate.mouse.go.web | Man page Source code |
| p2.make.pagoda1.app | Man page Source code |
| p2.metadata.from.factor | Man page Source code |
| p2.toweb.hdea | Man page Source code |
| p2ViewPagodaApp | Man page |
| pagoda.reduce.loading.redundancy | Man page Source code |
| pagoda.reduce.redundancy | Man page Source code |
| pagoda2WebApp | Man page |
| pagoda2WebApp-class | Man page |
| pagoda2WebApp_arrayToJSON | Man page |
| pagoda2WebApp_availableAspectsJSON | Man page |
| pagoda2WebApp_call | Man page |
| pagoda2WebApp_cellOrderJSON | Man page |
| pagoda2WebApp_cellmetadataJSON | Man page |
| pagoda2WebApp_geneInformationJSON | Man page |
| pagoda2WebApp_generateDendrogramOfGroups | Man page |
| pagoda2WebApp_generateEmbeddingStructure | Man page |
| pagoda2WebApp_generateGeneKnnJSON | Man page |
| pagoda2WebApp_getCompressedEmbedding | Man page |
| pagoda2WebApp_packCompressFloat64Array | Man page |
| pagoda2WebApp_packCompressInt32Array | Man page |
| pagoda2WebApp_readStaticFile | Man page |
| pagoda2WebApp_reducedDendrogramJSON | Man page |
| pagoda2WebApp_serializeToStaticFast | Man page |
| pagoda2WebApp_serverLog | Man page |
| pagoda2WebApp_sparseMatList | Man page |
| papply | Man page Source code |
| pathway.pc.correlation.distance | Man page Source code |
| plSemicompleteCor2 | Source code |
| plotMulticlassified | Man page Source code |
| plotOneWithValues | Man page |
| plotSelectionOverlaps | Man page Source code |
| projectKNNs | Man page Source code |
| read.10x.matrices | Man page Source code |
| read10xMatrix | Man page Source code |
| readPagoda2SelectionAsFactor | Man page Source code |
| readPagoda2SelectionFile | Man page Source code |
| referenceWij | Source code |
| removeSelectionOverlaps | Man page Source code |
| score.cells.nb0 | Man page Source code |
| score.cells.nb1 | Man page Source code |
| score.cells.puram | Man page Source code |
| sgd | Source code |
| sgdBatches | Man page Source code |
| show.app | Man page Source code |
| smatColVecCorr | Source code |
| sn | Man page Source code |
| sparse_matrix_column_ranks | Source code |
| subsetSignatureToData | Man page Source code |
| tp2c.view.pathways | Man page Source code |
| validateSelectionsObject | Man page Source code |
| view.aspects | Man page Source code |
| webP2proc | Man page Source code |
| winsorize.matrix | Man page Source code |
| winsorizeMatrix | Source code |
| writeGenesAsPagoda2Selection | Man page Source code |
| writePagoda2SelectionFile | Man page Source code |
