fit_xy() take a model specification, translate the required
code by substituting arguments, and execute the model fit
## S3 method for class 'model_spec' fit( object, formula, data, case_weights = NULL, control = control_parsnip(), ... ) ## S3 method for class 'model_spec' fit_xy(object, x, y, case_weights = NULL, control = control_parsnip(), ...)
An object of class
An object of class
Optional, depending on the interface (see Details below). A data frame containing all relevant variables (e.g. outcome(s), predictors, case weights, etc). Note: when needed, a named argument should be used.
An optional classed vector of numeric case weights. This
A named list with elements
Not currently used; values passed here will be
ignored. Other options required to fit the model should be
A matrix, sparse matrix, or data frame of predictors. Only some
models have support for sparse matrix input. See
A vector, matrix or data frame of outcome data.
fit_xy() substitute the current arguments in the model
specification into the computational engine's code, check them
for validity, then fit the model using the data and the
engine-specific code. Different model functions have different
interfaces (e.g. formula or
y) and these functions translate
between the interface used when
fit_xy() was invoked and the one
required by the underlying model.
When possible, these functions attempt to avoid making copies of the
data. For example, if the underlying model uses a formula and
fit() is invoked, the original data are references
when the model is fit. However, if the underlying model uses
something else, such as
y, the formula is evaluated and
the data are converted to the required format. In this case, any
calls in the resulting model objects reference the temporary
objects used to fit the model.
If the model engine has not been set, the model's default engine will be used
(as discussed on each model page). If the
verbosity option of
control_parsnip() is greater than zero, a warning will be produced.
If you would like to use an alternative method for generating contrasts when
supplying a formula to
fit(), set the global option
contrasts to your
preferred method. For example, you might set it to:
options(contrasts = c(unordered = "contr.helmert", ordered = "contr.poly")).
See the help page for
stats::contr.treatment() for more possible contrast
For models with
"censored regression" modes, an additional computation is
executed and saved in the parsnip object. The
censor_probs element contains
a "reverse Kaplan-Meier" curve that models the probability of censoring. This
may be used later to compute inverse probability censoring weights for
model_fit object that contains several elements:
lvl: If the outcome is a factor, this contains
the factor levels at the time of model fitting.
spec: The model specification object
object in the call to
fit: when the model is executed without error,
this is the model object. Otherwise, it is a
object with the error message.
preproc: any objects needed to convert between
a formula and non-formula interface (such as the
The return value will also have a class related to the fitted model (e.g.
"_glm") before the base class of
# Although `glm()` only has a formula interface, different # methods for specifying the model can be used library(dplyr) library(modeldata) data("lending_club") lr_mod <- logistic_reg() using_formula <- lr_mod %>% set_engine("glm") %>% fit(Class ~ funded_amnt + int_rate, data = lending_club) using_xy <- lr_mod %>% set_engine("glm") %>% fit_xy(x = lending_club[, c("funded_amnt", "int_rate")], y = lending_club$Class) using_formula using_xy
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